Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g783 ATGGAAAAGAATGTGCTTCCTTTGTTGTTGCATGCACTGGCTCTGCTGCTATGCACCAGGGCTGCAATGTGCGCACCACGCTGCGGAGACTGTGGCCGCATTCCTGTGCCTTACCCCCTCAGCACTGGACCTGGGTGCGGTGACCAGTCCTACAAGGTCCGGTGCAATGCAGGCACGCTGTGGTTTGATGCCCTCAGCCAATCCTCCTATGTTATCACGTCAATCAACCCGGGAACTCGACGGATGATCGTCAAACCAGCAAGCCTCCTTGCAAACACTTGCATCACAACCGATATCCAAGTTGGGGGTCTCCAGCTTGACCGCATCTCACCCTACAACATACCTAGCAGCAACACGATCATGCTGATGAACTGTTCAAATGCAGTGCTGAATTCATCTGTTAATTGCTCGCCAAACAGTATCTGTCATGCCTATATCAGAGAGAATGTGGTGGCGGCTGCGTGTAGGAGTACGGCAAAATGCTGTTGGTTCAAGGCTGGGGGCCCAGTGAACGCGTATAAGATCGGTGTTCGTGATGAGGGGTGCATGGCGTATCAGAGTTTTGTAAATTTGGCCACTTCATTACCAGTGAAGAGGTGGCCAGAGCCCGGGCTGGAGATAGAGTGGGCGTTACCACAAGAGCCAATTTGCAAAATCCCAAAAGATTGCTCGACCTTGTTGAATTCTATGTGTTTGCCAGATGGGGCAATCCTTGGACAGAGGAGGTGCTTCTGCAAAGCCGGGTTCCATTGGGGCCCCATCAATGGATTGTGTCAAAATTTGAAGTGTGAAAAAGCAAAATCTTGCAAGCACAAAAAGAAGTCACGGACCCCACTCCTTGGAGGTGTGGCAGTGGTGGCTGCAATCCTAATCCTGGTCCCAGTTGGAATTCTAGTCTGCAGGCATCGTCAGAACCTTAAGAGAGAAGCCCAGGGGAGCTTAATAAAAAAGCGAGAAGACATGTTAAATGCCAACAACAGTGGTAAAATGGCCAAGATCTTCAGTGGCAAGGAAATAAAAAGGGCAACAAACAACTTCTCCAAAGACAATTTCATAGGCTCTGGTGGCTTCAGTGAGGTCTTCAAGGGCATCCTTGACGACGGGACAGTGACCGCCGTCAAGCGCGCCAAGCTCGGAAACACCAAAGGCACTGATCAAGTTCTGAACGAGGTTCGAATTCTTTGCCAAGTGAACCATCGGTGCCTGGTTCGTCTTCTTGGCTGTTGTGTGGAGCTTGAACAACCTATCATGATATACGAGTACATCCCCAACGGCACCCTCTTTGACCATCTCCATGGGCACCATTCCAGAAAGTGGCCTGCACTCACCTGGCGCCGCCGCCTCTCTATTGCCCTCCAGACTGCTGAAGGCCTTGCTTATCTCCACTCGTCTGCCGTGCCACCCATTTACCATCGGGACGTTAAATCAAGTAACATTTTATTAGATGAAAAGCTTGACGCCAAGGTTTCTGACTTTGGGCTGTCGAGGCTGGCAGTTGTTTCAGAGGCGAATGCGAGTCATATCACTACATGTGCGCAAGGAACCTTAGGTTATCTTGACCCTGAATATTATCGCAACTTTCAACTTACTGACAAGAGTGATGTTTATAGCTTTGGGGTTGTGTTGTTGGAGCTGTTAACCTCCAAGAAAGCTATTGATTTTAACAGAGAGGAGGAAGATGTGAACCTTGTGCTGTACATTAAAAAGATTATGAAAGAAGAGAAGTTGATGGATGTCATTGATCCGGTGCTTAAAGACGGAGCTAGCAAGGTGGACATGGAGAGTGTGAAGGCATTGGGGTTGCTGGCAGCAGCATGTTTGGACGAGCGAAGGCAGAGTCGGCCTTCAATGAAAGAAGCTGCTGAGGAGATTGAGTACATCATTAGCATTATTGAGGTTCCAAAGGATTAA 1911 49.08 MEKNVLPLLLHALALLLCTRAAMCAPRCGDCGRIPVPYPLSTGPGCGDQSYKVRCNAGTLWFDALSQSSYVITSINPGTRRMIVKPASLLANTCITTDIQVGGLQLDRISPYNIPSSNTIMLMNCSNAVLNSSVNCSPNSICHAYIRENVVAAACRSTAKCCWFKAGGPVNAYKIGVRDEGCMAYQSFVNLATSLPVKRWPEPGLEIEWALPQEPICKIPKDCSTLLNSMCLPDGAILGQRRCFCKAGFHWGPINGLCQNLKCEKAKSCKHKKKSRTPLLGGVAVVAAILILVPVGILVCRHRQNLKREAQGSLIKKREDMLNANNSGKMAKIFSGKEIKRATNNFSKDNFIGSGGFSEVFKGILDDGTVTAVKRAKLGNTKGTDQVLNEVRILCQVNHRCLVRLLGCCVELEQPIMIYEYIPNGTLFDHLHGHHSRKWPALTWRRRLSIALQTAEGLAYLHSSAVPPIYHRDVKSSNILLDEKLDAKVSDFGLSRLAVVSEANASHITTCAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLELLTSKKAIDFNREEEDVNLVLYIKKIMKEEKLMDVIDPVLKDGASKVDMESVKALGLLAAACLDERRQSRPSMKEAAEEIEYIISIIEVPKD* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15111230 15113604 + Vvi8g783 Vvi8g783 791006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g783 636 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Vvi8g783 636 Pfam Wall-associated receptor kinase galacturonan-binding 24 84 IPR025287 GO:0030247
Vvi8g783 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vvi8g783 636 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 20 17 632 - -
Vvi8g783 636 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Vvi8g783 636 CDD STKc_IRAK 352 619 - -
Vvi8g783 636 SUPERFAMILY Protein kinase-like (PK-like) 325 624 IPR011009 -
Vvi8g783 636 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vvi8g783 636 SMART serkin_6 346 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g783 636 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 632 IPR045274 GO:0007166
Vvi8g783 636 ProSiteProfiles Protein kinase domain profile. 346 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g783 636 Pfam Protein kinase domain 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g783 Vvi13g355 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76826 PF00069 Pkinase 9.80E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g783 - - vvi:100256173 1236.48