Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g784 ATGGTTTCCACTGAAGAGATTTTGATCGAGAGGCCTAGGGCTCATGGTAGCAAAGCAGAGGAAACCAATACTGTGGGAGGAGATTCCCTGGCACAGCTTACAAAAGGAGGTGCTGTACTCATGGTGTGCAGGACTTGTGGGAAGAAGGGTGATCACTGGACATCCAGGTGTCCTTATAAGGATCTTGCACCACAACCTGAAGCCTTCATTGACAAACCTACTGCATCAGATCCCACTGCTGCGGCTTCTGTAACAAAGGGTGCATATGTTCCACCAAGCATGAGAGCTGGTGCTGATAGAAGCAGTGGTACAGATATGAGGCGCAGGAATGAAGAGAATGCTGTCCGGGTCAGCAATCTCTCAGAGGATACTCATGAGGCTGACTTGCGTGAGCTATTTAGCCGTTTTGGGCAACTAACCCGTGTTTATGTTGCCATTGACCACAAGACTGGTTTGAGCAGAGGTTTTGGGTATGTCAATTTTGTCAACAGGGAAGATGCTGAGAGAGCTATTAGTAAGCTCAATGGATATGGTTATGACAGTCTCATCCTGCAAGTTGAGTGGTCCACACCAAGACCGAACTAG 585 48.03 MVSTEEILIERPRAHGSKAEETNTVGGDSLAQLTKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQPEAFIDKPTASDPTAAASVTKGAYVPPSMRAGADRSSGTDMRRRNEENAVRVSNLSEDTHEADLRELFSRFGQLTRVYVAIDHKTGLSRGFGYVNFVNREDAERAISKLNGYGYDSLILQVEWSTPRPN* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15114655 15118998 - Vvi8g784 Vvi8g784 791007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g784 194 Gene3D - 72 194 IPR012677 -
Vvi8g784 194 SMART rrm1_1 114 187 IPR000504 GO:0003723
Vvi8g784 194 CDD RRM_eIF3G_like 114 189 IPR034240 -
Vvi8g784 194 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 194 - -
Vvi8g784 194 SUPERFAMILY RNA-binding domain, RBD 98 193 IPR035979 GO:0003676
Vvi8g784 194 MobiDBLite consensus disorder prediction 101 119 - -
Vvi8g784 194 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 194 - -
Vvi8g784 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 180 IPR000504 GO:0003723
Vvi8g784 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Vvi8g784 194 Pfam Eukaryotic translation initiation factor 3 subunit G 2 62 IPR024675 -
Vvi8g784 194 MobiDBLite consensus disorder prediction 90 119 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g524 Vvi8g784 ECH
Vvi8g784 Vvi13g356 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g784 K03248 - vvi:100242668 394.815