Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g809 ATGGCGGATGGTTTTGAACCCTACCACGTACCACAGCAGAGCAGAAGGGATAAGCTTAGAGTTGTGGCTCAGAACCACTCGGGCTGTGTGGAGGCAGCTACTAATCTTCACGGCTGCGCCGGTTTGCTCCCTCTCTACGATCCCTCACTGTTGCCTTCCGATTTGCTAACTTGCGCCAGCGCCAGCGCCCATGAGTTTCAGCACCATAGCCACCCACTTTCAGGCTCTGCTGAGGCTTGTAAGGCAAACCCAGGTTGTGTTGTTAAAGAAGAAGGCGTGAATTTGATGGGTTATGTTGATTTTGATCAGTCCTTCAATGGTGGTGAGATGGTGGTGTTCAAGCCGGAGCCCTTATCATTGACCCATCATGAGTACGGGTCTGCAATTTTTAGCGATAAGGTTACTGGTGGCTATATGGTTCCGGGCATTGTTGGTGGTAGTGGTTCCACCTCTAATGATGTATCGAGGAGTTCCGTCCCTCTCGGGCCTTTTACAGGCTATGCTTCAATTTTGAAGGGATCGAGGTTCCTGAAACCTGCACAGCAGTTGTTGGAGGAGTTCTGCGACGTGGGCTGCGGACTTTACGCCGAAAGAGTCTCAGCGGATTCGTCGATGATGGATCCTCCAATGGAGAGTCTGAGTGGAACTGGAATTGTTGATGATCCGCTCAGTTGTGGAGATGGGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGGTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCATCATTTGAATCGGTTGCTGGTCTCGGCAATGCGGCTCCCTATGCCGACTTGGCTCTGAAAGCTATGTCTAAACACTTCAGGTGTTTGAAGAATGCCATTACCGACCAGCTTCAGTTCACAAACAAAGCCCATGGACAAATAAGTCATGGAAAAGATGAAAGTCCAAGGTTTGGGAACACTGATAGAGGCCTTTATGGTCAAAGACCCATGCACAGCTCAGGATTTCTTGAACATCAACCTGTTTGGCGACCCCAAAGGGGACTTCCTGAGCGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTCCCGGAACCAGGTTTCCAACTGGTTCATCAATGCAAGAGTAAGACTTTGGAAGCCAATGGTGGAAGAGATACACACGCTGGAGACACGACAAGCTCAAAAATCTTCCCAGAGAGAGGAGCGAAGTGCCGACAGGCAGAGTGATCATTTACCTTCAGCAAACTCACTTGTGTTTGAAAATCCATCCACCTCTGCTCAAAGAGTTCAAGACGCCCCATCAAAACGTACCAGAAATGAGCTTTCTGAGGTACACGTGGGTAGTGAGGAGCCAATGAATTTATCTTACAATAACTTTAATGTTTCCCTGACACTGGGTCTTCACCAGAATAATGGGATTGGTTTATCAGAGTCCTTTCCTATTAATGCAGCTCAACGTTTTGGGCTTGGCCTTGATGCAAATAGCGAGGGATATGTTATAGGTGGTTTTGAAGCACAAAATCGGCATTTTGGAAGGGATGTTATTGGAGGGCAACTTTTACATGATTTTAATCACGACTGTTTGTTTTTGGCTTTTAAATATTTGCATGGACGATGA 1686 47.45 MADGFEPYHVPQQSRRDKLRVVAQNHSGCVEAATNLHGCAGLLPLYDPSLLPSDLLTCASASAHEFQHHSHPLSGSAEACKANPGCVVKEEGVNLMGYVDFDQSFNGGEMVVFKPEPLSLTHHEYGSAIFSDKVTGGYMVPGIVGGSGSTSNDVSRSSVPLGPFTGYASILKGSRFLKPAQQLLEEFCDVGCGLYAERVSADSSMMDPPMESLSGTGIVDDPLSCGDGGEHRRKKSRLISMLDEVYRRYKHYYQQMQAVVASFESVAGLGNAAPYADLALKAMSKHFRCLKNAITDQLQFTNKAHGQISHGKDESPRFGNTDRGLYGQRPMHSSGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETRQAQKSSQREERSADRQSDHLPSANSLVFENPSTSAQRVQDAPSKRTRNELSEVHVGSEEPMNLSYNNFNVSLTLGLHQNNGIGLSESFPINAAQRFGLGLDANSEGYVIGGFEAQNRHFGRDVIGGQLLHDFNHDCLFLAFKYLHGR* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15380686 15387772 - Vvi8g809 Vvi8g809 791032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g809 561 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 100 520 - -
Vvi8g809 561 SMART HOX_1 343 407 IPR001356 GO:0003677
Vvi8g809 561 MobiDBLite consensus disorder prediction 432 455 - -
Vvi8g809 561 MobiDBLite consensus disorder prediction 412 469 - -
Vvi8g809 561 Pfam Homeobox KN domain 360 399 IPR008422 GO:0003677|GO:0006355
Vvi8g809 561 ProSiteProfiles 'Homeobox' domain profile. 340 403 IPR001356 GO:0003677
Vvi8g809 561 Pfam Associated with HOX 170 295 IPR006563 -
Vvi8g809 561 Gene3D - 346 408 - -
Vvi8g809 561 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 100 520 - -
Vvi8g809 561 SUPERFAMILY Homeodomain-like 345 409 IPR009057 -
Vvi8g809 561 CDD homeodomain 343 404 IPR001356 GO:0003677
Vvi8g809 561 SMART prehox3 165 296 IPR006563 -
Vvi8g809 561 MobiDBLite consensus disorder prediction 412 431 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g809 Vvi13g367 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15196 PF07526 POX 2.20E-43 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g809 - - vvi:100266680 1056.2