Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g828 ATGTCGGATTGCTCGGTGGAGGTCGAAACTGAAAACGGGGTTCCCGAAATCAAGGTGCATTTGGCTAAAGCAGAGAGAGATTGTAGAATTTGTCACCTGAGCTTAGAGAGTAGTAACTATGAGTCCGGGATTCCTATTGAATTGGGTTGTTCTTGTAAGGAGGATTTGGCTGCTGCCCACAAACATTGTGCTGAAGCCTGGTTCAAGATTAAGGGAAATAAGACTTGTGAAATCTGTAATTCGACTGCACGAAATGTTTTTAGTGCAAGCGAAATGGAGTTGACAGAGCATTCGAATGAAACCAGCAATAATGCCACAGTCACAGCCACAGCCACAGCCCCAGCCCCAGCTGCAGTCTCTACAACAGTGTCTGGTGCTGAGACCCGAAGCTTCTGGCATGGCCATCGCTTCCTAAATTTCCTGCTTGCTTGCATGGTGTTTGCTTTTGTCATATCTTGGCTCTTTCACTTCAACGTGCCATCATGA 486 46.5 MSDCSVEVETENGVPEIKVHLAKAERDCRICHLSLESSNYESGIPIELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICNSTARNVFSASEMELTEHSNETSNNATVTATATAPAPAAVSTTVSGAETRSFWHGHRFLNFLLACMVFAFVISWLFHFNVPS* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15631372 15634455 - Vvi8g828 Vvi8g828 791051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g828 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 91 IPR013083 -
Vvi8g828 161 PANTHER ZINC FINGER, RING-CH-TYPE 2 161 - -
Vvi8g828 161 SUPERFAMILY RING/U-box 25 83 - -
Vvi8g828 161 ProSiteProfiles Zinc finger RING-CH-type profile. 20 86 IPR011016 GO:0008270
Vvi8g828 161 PANTHER OS01G0850200 PROTEIN 2 161 - -
Vvi8g828 161 SMART ringv_2 27 80 IPR011016 GO:0008270
Vvi8g828 161 Pfam RING-variant domain 28 79 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g828 Vvi13g418 ECH
Vvi6g555 Vvi8g828 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g828 - - vvi:100252869 319.701