Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g84 ATGGACTTCTTGGAAGCGCCAGAAATCCAGATTCTGGGTGTGGCTGTGGCTGCTGTGGCAGTTGTGGCTGGGGCTGCATATTTCTATTCCACCAGGAAACCCAAAGGCTGCCTAGACCCTGAGAACTTCAAGCAATTCAAACTTGTCAAGCGCACACAGCTCAGCCATAATGTAGCAAAGTTCAGATTTGATCTTCCTACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAGGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTGGAGGTTCTGGAATTACACCAATGTTCCAAGTTGCTAGAGCTATATTAGAAAACCCAAAAGACAAAACGAAGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGGAGGAACTGGAAGGCCTTTCTGCCAGCTACCCTGATCACTTTAAAGTTTACTATGTTCTGAATCAGCCTCCTGAAGCATGGAACGGTGGCGTCGGGTTTGTATCCAAGGAAATGATCAAGGCCCATTGCCCTGCACCTGCATCTGACATTAAGATTCTCCGATGTGGTCCACCACCCATGAACAAGGCCATGGCCGCCATCCTCAACGATATTGGATACACAGATGAGATGCAGTTCCAGTTCTAA 834 45.68 MDFLEAPEIQILGVAVAAVAVVAGAAYFYSTRKPKGCLDPENFKQFKLVKRTQLSHNVAKFRFDLPTPTSVLGLPIGQHISCKGKDGEGQEIIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQVGQVRAFGMLAGGSGITPMFQVARAILENPKDKTKVHLIYANVTFEDILLKEELEGLSASYPDHFKVYYVLNQPPEAWNGGVGFVSKEMIKAHCPAPASDIKILRCGPPPMNKAMAAILNDIGYTDEMQFQF* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1761042 1769183 - Vvi8g84 Vvi8g84 790307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g84 277 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 41 145 IPR017927 GO:0016491
Vvi8g84 277 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 277 IPR001834 GO:0016491
Vvi8g84 277 Pfam Oxidoreductase NAD-binding domain 154 260 IPR001433 GO:0016491
Vvi8g84 277 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 133 273 IPR039261 -
Vvi8g84 277 Gene3D - 136 277 IPR039261 -
Vvi8g84 277 Pfam Oxidoreductase FAD-binding domain 46 144 IPR008333 -
Vvi8g84 277 Gene3D Translation factors 36 135 - -
Vvi8g84 277 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 153 172 IPR001709 GO:0016491
Vvi8g84 277 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 191 202 IPR001709 GO:0016491
Vvi8g84 277 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 247 255 IPR001709 GO:0016491
Vvi8g84 277 CDD cyt_b5_reduct_like 46 277 - -
Vvi8g84 277 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 277 - -
Vvi8g84 277 PRINTS Cytochrome B5 reductase signature 72 83 - -
Vvi8g84 277 PRINTS Cytochrome B5 reductase signature 94 101 - -
Vvi8g84 277 PRINTS Cytochrome B5 reductase signature 130 144 - -
Vvi8g84 277 PRINTS Cytochrome B5 reductase signature 153 172 - -
Vvi8g84 277 PRINTS Cytochrome B5 reductase signature 191 202 - -
Vvi8g84 277 PRINTS Cytochrome B5 reductase signature 247 255 - -
Vvi8g84 277 SUPERFAMILY Riboflavin synthase domain-like 37 144 IPR017938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g84 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - vvi:100263819 556.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g897 Vvi8g84 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86