Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g846 ATGCTTCAAATCCGGCTTAGCAGGGACCCATCCCTGGGAAGTGGCAGTGGGTCAAAGCCTTTGCCGGTGGAAACTGTGACAGTTGCATGTCCTGACCACCTTGTCCTTGCAGACCTCCCTGTGGCAAAGAGCCTCGGTTCAATGACTGCTGCTTCCCTTGTTAAGACTGTAGGTCGGAGATCCCGTCGCCAGCTCGGTGAACGAGTTCATTTCTGTGTTCGATGTGATTTCCCCATTGCAATCTATGGACGCCTGATTCCATGTGAGCATGCCTTTTGTCTCGATTGTGCTAGGAGTGATTCTATCTGCTACCTTTGTGATGAACGCATTCAGAAGATTCAGACTATTAAAATGATGGAAGGGATCTTCATCTGTGCAGCCCCTCACTGTCTAAAGTCCTTCCTAAAGAGGGCTGAATTTGAGTCACATATTCATGAGAGCCATGCAGACCTTCTTCAACCAAACGCAGAGAAAGAAGATGGAAACGAGTCAGAAGCTCTGAGTGTCAAACAATCTACTGTTTCCGACTCCACAGCAAGAGCTCCATCGCGGCCAGTTTTCTCTCCTAGCTCAAGTTTTGACAGGCCTGGTTTGCACCGCTTCCATCCACAGACATTTGACAATCAGGGTGGTCTGCAGCAAGAATCTGCCCAGTTTTCAGACAAGCAGCAAGGAATTTTATCTGAGTCTCCATATGCTGAATACCCTCCTCTGCATTCCCATCAACCACCCAATTTTGCAGTGCCACTTAATCCAAATCCACTGCTAACTCCCCCTCCGTTCAATTATCATCATTTTCCATCTGAGGGAGCTCAAACATTTTACAGCTCTCCACATGAGATGGCACGGCCTGATTCAGCACCAGATGTTGGAACAGAACAAGGGTCATTGTTGGGTTTCCCACCTGGTCCGGTAGGTGGTGTGAATTTCCCAGAAAGTTATCCTCGTCCCTGGAACAGCGGACCTCTCAAAAGAGCTAAGTTCTTTTCTGGTGATACAAGCCGAGATGGACAGGGATTTGGATGGCAGCAGGAGAAGCATGATAGTTTTGGAAGTGGGCAGGACTAG 1068 48.5 MLQIRLSRDPSLGSGSGSKPLPVETVTVACPDHLVLADLPVAKSLGSMTAASLVKTVGRRSRRQLGERVHFCVRCDFPIAIYGRLIPCEHAFCLDCARSDSICYLCDERIQKIQTIKMMEGIFICAAPHCLKSFLKRAEFESHIHESHADLLQPNAEKEDGNESEALSVKQSTVSDSTARAPSRPVFSPSSSFDRPGLHRFHPQTFDNQGGLQQESAQFSDKQQGILSESPYAEYPPLHSHQPPNFAVPLNPNPLLTPPPFNYHHFPSEGAQTFYSSPHEMARPDSAPDVGTEQGSLLGFPPGPVGGVNFPESYPRPWNSGPLKRAKFFSGDTSRDGQGFGWQQEKHDSFGSGQD* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15786366 15791185 + Vvi8g846 Vvi8g846 791069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g846 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Vvi8g846 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Vvi8g846 355 MobiDBLite consensus disorder prediction 150 165 - -
Vvi8g846 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 185 IPR040383 GO:0016567|GO:0061630
Vvi8g846 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 190 322 IPR040383 GO:0016567|GO:0061630
Vvi8g846 355 MobiDBLite consensus disorder prediction 325 355 - -
Vvi8g846 355 MobiDBLite consensus disorder prediction 336 355 - -
Vvi8g846 355 MobiDBLite consensus disorder prediction 232 251 - -
Vvi8g846 355 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Vvi8g846 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 190 322 - -
Vvi8g846 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 185 - -
Vvi8g846 355 MobiDBLite consensus disorder prediction 150 223 - -
Vvi8g846 355 MobiDBLite consensus disorder prediction 166 190 - -
Vvi8g846 355 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Vvi8g846 355 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Vvi8g846 355 MobiDBLite consensus disorder prediction 206 223 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g846 K15685 - vvi:100244343 595.119