Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g852 ATGGACTTAAATGCCTCGCCGCTACCTGAAGAAGATGAAGAGACTTTTGAACGGCATATAGAAGAATACACTGCACCAGAAGAACATGTAGAGACTGCAGTTGAAATTTCGCGCCGGGAGCGCGAAGAAAGACGTAGGCGGCTGAAAAGAGAACGCCCAGATGACAGATCGGTGAATGGACCTTCTGTGCATGATCGACCGTTTCAAACAAGAAATCATAGATCACATGATAGAAATAAGCTCCCCCCTGGTTGGTTGGATTGCCCTGCATTTGGTCAGGAAATCAATTTCATTATTCCTTCTAAGGTGCCTCTCGGTGAATCCTTCAATGACCTTGTCGCTCCTGGTAAAAGATACTCTTCTAGACAAGTGATTCATCAACAGAGAGTTCTAGGAAGAAAACTTGGTTTAGTAATCGATCTGACCAACACCACTCGTTACTATCCATCATCAGATTGGGAGAGAGAAGGTATTAAGCATATCAAGATCGCATGCAAGGGGCGGGATTCTGTACCTGATAATGCAGCTGTAAACTCCTTTGTTTATGAAGTCTCTCAATTTCTTTCTCGTCAGAAACAAACAAAGAAGTATATTCTGGTACATTGTACCCATGGTCATAATCGCACAGGTTATATGATCGTTCATTATCTTATGCGGTCACAGTCAATGTCTGTCACTCAGGCAATAAAAATTTTTGCTGATGCACGTCCTCCAGGAATCTACAAACATGATTATATTGATGGACTGTATGCATTTTATCATGAAAGAAAGCCTGAATTGGTCATTTGTCCTCCAACTCCTGAGTGGAAGAGATCTTCAGATCTTGATCTCAATGGTGAAGCGATGCCTGATGATGATGATGATGGAGTCTCAGCGGCTCCTGGGCATGAAAAGCATGAGGTAGATGTAGTAATGACAAATGACGACAAAATAGGAGATGACATACCTCCTGAGCAGCAGAAGGCACTGCAGCAGTTCTGTTATCAATCACTTAAGTTGCCTGTTGGGGGGCATAGAGGACCCTCGCAATTCCCCGGGTCACACCCAGTTTCACTTAACAGGGATAATCTACAACTGTTAAGACAACGCTATTATTATGCCACATGGAAAGCTGATGGAACTCGATATATGATGCTAATAACTGTGGATGGGTGCTATTTAATTGATAGGACTTTTACATTTCGGAGGGTCCAGATGAGGTTTCCCTGCAAAATTACAAATGATGGTTTTGTCGAAAAGACTCATCATTTTACATTGCTTGATGGGGAGATGATAATCGATACCATGCCAGATTCACAGAAGCAGGAGAGGAGATACCTCATCTATGATCTGATGGCAATTAACCAAGTGTCAGTCATAGAGCGGCCCTTCTATGAAAGGTGGAAGATGCTAGAAAAAGAAGTGATTGAGCCTCGGAATTATGAACGCCAGAATGTTTACCAAAGTAGGAATCCTTATTACAGATATGACTTGGAACCATTCAGGGTGAGAAGGAAGGATTTTTGGTTGCTGTCTACTGTTACCAAGCTTCTAAAGGAATTCATTCCAAGACTTTCACATGATGCAGATGGTCTTATTTTTCAGGGTTGGGATGATCCTTATATTCCCCGTACACATGAAGGCCTCTTAAAGTGGAAATACGCTAACATGAACTCAGTCGACTTTCTATTTAAGATGAGTGCTGATAATCATCCACAGCTTTTTCTGAATGAACGAGGGAAAGAGAAACTGATGGAAGGGAACCGGGTTTCATTTAAAGATGGTTTAGATCCCTCTTCATATCATGGAAAAATTATCGAGTGTTCTTGGGATTTTGATGCAAGAGAATGGAGCTTTATGCGGGTCAGAATTGATAAATCAACCCCAAATGAGTTTGGAACATACATGAAGGTGATGCGAAGCATAAGGGACAATATTACAGAAGAAGTGCTGTTAACTGAGATTCGCGAAATAGTTCGCTTGCCTATGTATGCTGATAGGATATGGAATGATAGCAAAGCCCACCAGCATACAAATGCAGCACGACGTAGGTGA 2034 41.94 MDLNASPLPEEDEETFERHIEEYTAPEEHVETAVEISRREREERRRRLKRERPDDRSVNGPSVHDRPFQTRNHRSHDRNKLPPGWLDCPAFGQEINFIIPSKVPLGESFNDLVAPGKRYSSRQVIHQQRVLGRKLGLVIDLTNTTRYYPSSDWEREGIKHIKIACKGRDSVPDNAAVNSFVYEVSQFLSRQKQTKKYILVHCTHGHNRTGYMIVHYLMRSQSMSVTQAIKIFADARPPGIYKHDYIDGLYAFYHERKPELVICPPTPEWKRSSDLDLNGEAMPDDDDDGVSAAPGHEKHEVDVVMTNDDKIGDDIPPEQQKALQQFCYQSLKLPVGGHRGPSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLIDRTFTFRRVQMRFPCKITNDGFVEKTHHFTLLDGEMIIDTMPDSQKQERRYLIYDLMAINQVSVIERPFYERWKMLEKEVIEPRNYERQNVYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDPYIPRTHEGLLKWKYANMNSVDFLFKMSADNHPQLFLNERGKEKLMEGNRVSFKDGLDPSSYHGKIIECSWDFDAREWSFMRVRIDKSTPNEFGTYMKVMRSIRDNITEEVLLTEIREIVRLPMYADRIWNDSKAHQHTNAARRR* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15836616 15865946 + Vvi8g852 Vvi8g852 791075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g852 677 Pfam mRNA capping enzyme, catalytic domain 348 546 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vvi8g852 677 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 178 247 IPR000387 GO:0016311|GO:0016791
Vvi8g852 677 CDD RNA_5'-triphosphatase 84 250 - -
Vvi8g852 677 ProSiteProfiles Dual specificity protein phosphatase domain profile. 108 259 IPR020422 GO:0006470|GO:0008138
Vvi8g852 677 Pfam mRNA capping enzyme, C-terminal domain 550 645 IPR013846 -
Vvi8g852 677 Gene3D Protein tyrosine phosphatase superfamily 59 276 IPR029021 -
Vvi8g852 677 CDD Adenylation_mRNA_capping 318 547 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vvi8g852 677 MobiDBLite consensus disorder prediction 21 82 - -
Vvi8g852 677 Pfam Dual specificity phosphatase, catalytic domain 134 253 IPR000340 GO:0008138|GO:0016311
Vvi8g852 677 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 80 270 IPR029021 -
Vvi8g852 677 Gene3D DNA ligase/mRNA capping enzyme 300 544 - -
Vvi8g852 677 MobiDBLite consensus disorder prediction 277 297 - -
Vvi8g852 677 Gene3D - 545 654 IPR012340 -
Vvi8g852 677 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Vvi8g852 677 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 1 677 - -
Vvi8g852 677 PIRSF mRNA_capping_HCE 68 677 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vvi8g852 677 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 340 547 - -
Vvi8g852 677 SUPERFAMILY Nucleic acid-binding proteins 549 661 IPR012340 -
Vvi8g852 677 PANTHER MRNA-CAPPING ENZYME 1 677 - -
Vvi8g852 677 SMART dsp_5 109 255 IPR020422 GO:0006470|GO:0008138
Vvi8g852 677 MobiDBLite consensus disorder prediction 21 81 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g852 K13917 - vvi:100256199 1375.53