Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g868 ATGGACGTGATTAAAACGCAGCAGATATCATCCAGACCGATCGAGAAGGTCATAGTCCATCCTCTGGTGCTTCTCAGCATCGTCGACAACTACAACCGAGTCGCCAAAGACACTCGAAAACGAGTCATCGGAGTTCTACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATGCCAAGGAGCACGTGGTTGGATGGTACAGCACAGGACCAAAACTGCGGGAGAATGACCTAGATATTCACGGACTGTTCCATGACTATGTTCCCAATCCTGTCTTAGTCATAATTGATGTCCAACCAAAGGAGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAATACGTGGTTATCTTGATCTTGTGGTTGATGGAAAGCTTCCTCTAAATCATGAGATTCTTTACCATCTCCAGGATGTTTTCAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAAGTGTTATAGCTCTCCACAACTTGATCAATAACAAGATGCTTAACAAAGAGCATGAGAAAGCTGAGGATGCAAAGCCAGCAGCCGTCCCGGCCGTTGCTGGAAGCTGA 933 43.62 MDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVIGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLAALKGLDARLREIRGYLDLVVDGKLPLNHEILYHLQDVFNLLPNLNVAELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDAKPAAVPAVAGS* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16034548 16040052 - Vvi8g868 Vvi8g868 791091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g868 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Vvi8g868 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Vvi8g868 310 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 310 - -
Vvi8g868 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Vvi8g868 310 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Vvi8g868 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi8g868 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi8g868 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 310 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g868 Vvi13g443 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g868 K03038 - vvi:100247677 612.453