Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g884 ATGGGTCTTAACTGTTTTGGTGCATTTGAATGGTGTAAAGGGAAGAAGAGTCTCAGGGAGCCAGAGGCAGAAGAGATTGCTACAAACAATGTGAGGCTCTTCTCTTATAATTCACTGAGATCAGCTACAAATAACTTCCATCCATCAAGCAGAGTAGGTGGAGGTGGTTTCGGAGTTGTGTATAGGGGCGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTGTCTTTCTGCTGAATCTAAACAAGGAACACAAGAATTCTTAACAGAGATTAACATGATATCAAATATCCGACATCCCAACCTTGTTGAACTCATTGGGTGTTGCATTGAAGGCAGTAATCGGATATTGGTGTATGAATATCTGGAGAACAATAGCATTGCAAGCATAATACTTGGTTCAAAAGGTAAACATGTGATTCTGGATTGGCCTACAAGAGTTTCTATCTGCATGGGTACAGCCTCTGGTCTTGCATATCTTCATGAGGAAGCTGAACCACATATTGTCCACAGAGATATTAAGGCTAGTAATGTACTTCTTGATGGAAGCTTTCTTCCTAAAATTGGAGATTTTGGTTTGGCAAAACTTTTCCCGGACAATGTCACTCATGTTAGCACTCGAGTAGCAGGGACAGTGGGATATCTGGCCCCAGAGTATGCCTTGTTGGGACAGCTTACTAAAAAGGCAGATGTATACAGTTTTGGGGTGCTTATGCTTGAAATAATTAGTGGCAGAAGTAGTAGTAAAGCAGCATTTGGAGAGGAACTATTGGTTCTGGTAGAATGGACATGGAAGCTGAAGGAAGAAGAAAGACTTCTGGAAATTGTTGATCCAGAACTGACTGATTATCCAGAGGACGAGATGATGCGCTTCATTAAGGTTGCGCTTTTTTGCACTCAAGCTGCTTCACACCAAAGACCCAACATGAAGCTAGTGGTGGATATGCTGTCCAAGGATGTTATTCTCAATGAGAAGGTACTAACACGGCCAGGGGTGTACAAGGGCCGGCCAACTCATCATGTGGAAAGTAGTCCACAGGAGTCATCATCTTCTCAGGGAAATAAAGGCAAGCAATCAATAAATCCTTCTGTGTCTTCAACCAGTTTAGGCAGCCAGAGTGTGACGCAAATGCTTCCCAGGTGA 1143 42.78 MGLNCFGAFEWCKGKKSLREPEAEEIATNNVRLFSYNSLRSATNNFHPSSRVGGGGFGVVYRGVLRDGTQVAIKCLSAESKQGTQEFLTEINMISNIRHPNLVELIGCCIEGSNRILVYEYLENNSIASIILGSKGKHVILDWPTRVSICMGTASGLAYLHEEAEPHIVHRDIKASNVLLDGSFLPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGRSSSKAAFGEELLVLVEWTWKLKEEERLLEIVDPELTDYPEDEMMRFIKVALFCTQAASHQRPNMKLVVDMLSKDVILNEKVLTRPGVYKGRPTHHVESSPQESSSSQGNKGKQSINPSVSSTSLGSQSVTQMLPR* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16186418 16192809 - Vvi8g884 Vvi8g884 791107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g884 380 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vvi8g884 380 SMART serkin_6 46 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g884 380 Pfam Protein tyrosine and serine/threonine kinase 50 315 IPR001245 GO:0004672|GO:0006468
Vvi8g884 380 MobiDBLite consensus disorder prediction 331 380 - -
Vvi8g884 380 MobiDBLite consensus disorder prediction 342 380 - -
Vvi8g884 380 CDD STKc_IRAK 65 318 - -
Vvi8g884 380 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g884 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vvi8g884 380 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 365 - -
Vvi8g884 380 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Vvi8g884 380 Gene3D Transferase(Phosphotransferase) domain 1 122 327 - -
Vvi8g884 380 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 365 - -
Vvi8g884 380 SUPERFAMILY Protein kinase-like (PK-like) 24 316 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g608 Vvi8g884 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76832 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g884 - - vvi:100266670 732.25