Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g89 | ATGGAAGATCGAGGGCAAGACCATGGCTTGGAGAGAAATGAACCAGTGAGGTCAAGGTGGACTCCAAAGCCTGAGCAAATAATCATACTTGAGTCCATCTTCAACAGTGGTATGGTAAATCCTCCCAAAGATGAAACTGTGAGGATAAGAAAATTGCTGGAGCCTTATGGTTCTGTTGGGGATGCAAATGTCTTCTACTGGTTCCAAAACAGAAGATCGAGATCTAGACGTCGGCAGCGCCAGATTCAGGCCAGCCTTGCTGGAGATCGAGGAGCTCAGGCACATGCTGGTGGTGCAATTCACTATCAAAGTAACCTGATGCCGCCTTCTGCTTTTGTTCCGTCTTCATCTTCTTGCCTCGTCGGTTCCTCTTCATCATGCGGTGGTATGAACGATGATGGTGTCGATAATCTCTTTTCATTCTCCGGTCAAGTGGGTCTCCAGGAAATGGAGAACAGCTCTGGTGTAACATCAACCTTGTGCCCTTCAAACACCTCCAATTTGCACTACCAATCTGGATGTGTTACGGTGTTCATCAATGGGGTTCCAACTGAGGTTCCAAAGGGGTCATTTGACATGAAAGCTATGTTTGGCCAAGATTTCGTGTTGGTCCATTCCTCGGGAGTGCCTGTTCCTTTCAATGAATTTGGCTTCTCAATGCAGAGCTTGCAACATGGTGAAAGCTATTTCCTGGTAAGCATAGCTAGGTAG | 711 | 46.98 | MEDRGQDHGLERNEPVRSRWTPKPEQIIILESIFNSGMVNPPKDETVRIRKLLEPYGSVGDANVFYWFQNRRSRSRRRQRQIQASLAGDRGAQAHAGGAIHYQSNLMPPSAFVPSSSSCLVGSSSSCGGMNDDGVDNLFSFSGQVGLQEMENSSGVTSTLCPSNTSNLHYQSGCVTVFINGVPTEVPKGSFDMKAMFGQDFVLVHSSGVPVPFNEFGFSMQSLQHGESYFLVSIAR* | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1900036 | 1901212 | - | Vvi8g89 | Vvi8g89 | 790312 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g89 | 236 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 6 | 233 | IPR044558 | GO:0003700|GO:0048830 | |
Vvi8g89 | 236 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 6 | 233 | - | - | |
Vvi8g89 | 236 | SUPERFAMILY | Homeodomain-like | 13 | 84 | IPR009057 | - | |
Vvi8g89 | 236 | SMART | HOX_1 | 15 | 82 | IPR001356 | GO:0003677 | |
Vvi8g89 | 236 | Pfam | Homeodomain | 17 | 77 | IPR001356 | GO:0003677 | |
Vvi8g89 | 236 | ProSiteProfiles | 'Homeobox' domain profile. | 13 | 78 | IPR001356 | GO:0003677 | |
Vvi8g89 | 236 | Gene3D | - | 17 | 84 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15201 | PF00046 | Homeodomain | 1.40E-12 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g89 | - | - | vvi:100246660 | 458.759 |