Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g89 ATGGAAGATCGAGGGCAAGACCATGGCTTGGAGAGAAATGAACCAGTGAGGTCAAGGTGGACTCCAAAGCCTGAGCAAATAATCATACTTGAGTCCATCTTCAACAGTGGTATGGTAAATCCTCCCAAAGATGAAACTGTGAGGATAAGAAAATTGCTGGAGCCTTATGGTTCTGTTGGGGATGCAAATGTCTTCTACTGGTTCCAAAACAGAAGATCGAGATCTAGACGTCGGCAGCGCCAGATTCAGGCCAGCCTTGCTGGAGATCGAGGAGCTCAGGCACATGCTGGTGGTGCAATTCACTATCAAAGTAACCTGATGCCGCCTTCTGCTTTTGTTCCGTCTTCATCTTCTTGCCTCGTCGGTTCCTCTTCATCATGCGGTGGTATGAACGATGATGGTGTCGATAATCTCTTTTCATTCTCCGGTCAAGTGGGTCTCCAGGAAATGGAGAACAGCTCTGGTGTAACATCAACCTTGTGCCCTTCAAACACCTCCAATTTGCACTACCAATCTGGATGTGTTACGGTGTTCATCAATGGGGTTCCAACTGAGGTTCCAAAGGGGTCATTTGACATGAAAGCTATGTTTGGCCAAGATTTCGTGTTGGTCCATTCCTCGGGAGTGCCTGTTCCTTTCAATGAATTTGGCTTCTCAATGCAGAGCTTGCAACATGGTGAAAGCTATTTCCTGGTAAGCATAGCTAGGTAG 711 46.98 MEDRGQDHGLERNEPVRSRWTPKPEQIIILESIFNSGMVNPPKDETVRIRKLLEPYGSVGDANVFYWFQNRRSRSRRRQRQIQASLAGDRGAQAHAGGAIHYQSNLMPPSAFVPSSSSCLVGSSSSCGGMNDDGVDNLFSFSGQVGLQEMENSSGVTSTLCPSNTSNLHYQSGCVTVFINGVPTEVPKGSFDMKAMFGQDFVLVHSSGVPVPFNEFGFSMQSLQHGESYFLVSIAR* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1900036 1901212 - Vvi8g89 Vvi8g89 790312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g89 236 PANTHER WUSCHEL-RELATED HOMEOBOX 11 6 233 IPR044558 GO:0003700|GO:0048830
Vvi8g89 236 PANTHER WUSCHEL-RELATED HOMEOBOX 11 6 233 - -
Vvi8g89 236 SUPERFAMILY Homeodomain-like 13 84 IPR009057 -
Vvi8g89 236 SMART HOX_1 15 82 IPR001356 GO:0003677
Vvi8g89 236 Pfam Homeodomain 17 77 IPR001356 GO:0003677
Vvi8g89 236 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Vvi8g89 236 Gene3D - 17 84 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15201 PF00046 Homeodomain 1.40E-12 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g89 - - vvi:100246660 458.759