Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g893 ATGTCCTCTTCTTCCCTTCGGAAGAAGTCCGATCTCTCCCTTGTCAACAAAGTTCCCTGCGGATTGGTGAGGCAGCTATTGGCCAATCTCCAGGAGGTCATCCTCGGGACTAAGCTCTCCGTTCTCTTTCCGGCTATCCCGCTTGCCATCGTCGCCCAGTACTACGGCTTTGCCGGGCCTTGGATTTTCGGTCTGAGCTTGCTTGGACTCACCCCGCTTGCTGAACGGCTTGGCTTTCTGACCGAGCAAATAGCATATTATACTGGTCCAACAGTTGGAGGGCTTCTAAATGCAACATGTGGTAATGCCACAGAGCTGATAATTGCAATATTCGCTTTGAGCAAGAACAAAATTTTAGTGGTGAAGTATTCTCTACTGGGCTCTGTGCTCTCCAATCTTCTTCTGGTTCTTGGGACTTCTCTCTTCTGTGGTGGCATTTACAACCTTAGAGAGGAGCAGAAATATGATAGGAAACAATCCGACATAAACTCGCTCCTTCTGCTTCTGGGATTGTTGTGCCACATGCTACCATTGATGTTTCGGTATGCAGCAAACCCCAGTGGTGCCGCTCTTATTGCAGACTCAACTCTCTCTCTATCAAGAGCTGGCAGCATTGTGATGCTCGTAGCATACTTGGCTTACCTAGTTTTCCAGTTGTGGACCCACAGGAAATTGTTTGAGGCACCAGAGGATGGTGATGATGACACTGTGAGTTCTGATGAAGAGCCTGTTATAGGATTTTGGAGTTCAGTTGTCTGGCTGATTTTAATGACGGCTATCATTGCTTTATTATCTGAGTTTGTTGTCGGCACGATTGAGGTTGCATCAGAATCTTGGGGTATTTCTGTCAGCTTCATCAGCATAATCTTGTTGCCCATAGTTGGAAACGCTGCAGAACATGCTGGAGCAGTCATATTCGCCTTTAAGAACAAGTTGGATATATCTTTGGGTGTTGCTTTGGGGTCTGCAACTCAAATTGCAATGTTTGTGGTTCCATTATGCGTGTTGGTTGCCTGGATAATGGGCATCAGGATGGATCTTGATTTCAGTCTCCTTGAGACAAGCTCTCTTGCTTTAGCCATAATTGTCACAGCCTTCACTCTACAGGATGGATCTTCTCACTACATGAAAGGATTGGTCCTTCTGCTGTGCTATGTTGTTATCGGGGCCTGCTTTTTCGTTTCCAAAACAACCCCCGACCAAGGAAATGGCATCACCCCGGGGATCAAGTTGCCAACTGAAGGAGTCGTCAGTGCTTAA 1260 46.83 MSSSSLRKKSDLSLVNKVPCGLVRQLLANLQEVILGTKLSVLFPAIPLAIVAQYYGFAGPWIFGLSLLGLTPLAERLGFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALSKNKILVVKYSLLGSVLSNLLLVLGTSLFCGGIYNLREEQKYDRKQSDINSLLLLLGLLCHMLPLMFRYAANPSGAALIADSTLSLSRAGSIVMLVAYLAYLVFQLWTHRKLFEAPEDGDDDTVSSDEEPVIGFWSSVVWLILMTAIIALLSEFVVGTIEVASESWGISVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVLVAWIMGIRMDLDFSLLETSSLALAIIVTAFTLQDGSSHYMKGLVLLLCYVVIGACFFVSKTTPDQGNGITPGIKLPTEGVVSA* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16261331 16266123 - Vvi8g893 Vvi8g893 791116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g893 419 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 1 405 - -
Vvi8g893 419 Pfam Sodium/calcium exchanger protein 60 220 IPR004837 GO:0016021|GO:0055085
Vvi8g893 419 Pfam Sodium/calcium exchanger protein 250 388 IPR004837 GO:0016021|GO:0055085
Vvi8g893 419 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 405 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vvi8g893 419 TIGRFAM cax: calcium/proton exchanger 44 393 IPR004798 GO:0006816|GO:0015369
Vvi8g893 419 Gene3D - 90 236 IPR044880 -
Vvi8g893 419 Gene3D - 237 393 IPR044880 -
Vvi8g893 419 TIGRFAM caca2: calcium/proton exchanger 25 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g623 Vvi8g893 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g893 K07300 - vvi:100240763 779.63