Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g917 ATGTCTGGACCTCGAGCTCCCACCCGCTCCGCGCCTCCGCCGCCTTCCTCTGGTCAGATCCTGCGGCCGATGAAGCGTCACCTCCCCTTCACGTCTACCAAGCCGCCGTTCGTCCCTCCTGACGATTACCACCGGTTTTCGTCTGCCGATGCTCACGGGGTTGCCAATCACGAACCTGAAGGCATTGTCGTCAAGTCCCCTCAATTGAAGCGGAAAAGTGCAATGGATGACAATGAAGTCGGATCTAGTGAATGGACTGCCAGTCCTGGATATGCTGATGCAGGTAACAGTCCCTTTCGAACTCCTGTTTCTGGAAAAGGGGGAAGGATATACAGCAAGTCAAAGGTCTCAAAGGGCAATGTATGTGGACCTCAGACCCCTGTGTCAAATGCTGGTTCCCCTTCTACTCTTACTCCAGCTGGCAACTGCCGCTATGACAGTTCGCTAGGTCTTTTAACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGTATTCTTGACCTAAACAAAGCTGCTGAGACTTTGGAGGTTCAGAAGAGGCGGATATATGACATAACAAATGTTCTGGAAGGAATTGGTCTCATTGAAAAGAAGCTCAAGAACAGGATCCGCTGGAAGGGGCTTGATGTTTCAAGGCCAGGGGAGGTTGATGATGATGTCACCATTTTACAGGCAGAAGTTGAAAACCTTTCCCTGGAAGAACGCAGATTAGATGATCACATCAGGGAAATGCAGGAAAAGTTGAGGGATTTGAGCGAAGATGAAAACAATCAAAAGTGGCTTTTTGTGACTGAAGATGACATCAAGGGCCTACCCTGCTTTCAGAATGAGACCCTTATAGCAATTAAAGCTCCACATGGGACCACTCTGGAAGTTCCAGATCCTGATGAGGCTGTTGACTATCCACAGAGAAGATATCGTATAGTCCTTAGAAGCACAATGGGTCCAATCGATGTCTACCTTGTCAGTCAATTTGAGGAAAAATTTGAGGAGATGAATGGGACTCCGCCTCCTTTGAGCTTTCCTCTTGCATCAAGTTCAGGGTCTAATGAGAACCCATCAACAGAGGTCGTCATTGCTGATAGCAGTGGGAAGGAACTTGAACCTCAAGATGGTTATCAAATGTGTTCTGATCTTACTGCATCACAGGAGTTTATCGGAGGAATCATGAAGATCGTTCCTGATGTTGATAGTGATGCTGATTACTGGCTTCGATCAGATGCAGAAGTTAGCATTACAGATATGTGGAAGACAGACTCGTATGTTGAATGGAATGGAGTGGATATGCTTAACGCAGAGTTTGGAATGGCTGATGTCAGTACTCCACTGCCTCAAACACCTCCATCTGGCCTTACCGAGGGGCCGTCTACTGCTGTTAACCCTACACATAGGTGA 1401 47.32 MSGPRAPTRSAPPPPSSGQILRPMKRHLPFTSTKPPFVPPDDYHRFSSADAHGVANHEPEGIVVKSPQLKRKSAMDDNEVGSSEWTASPGYADAGNSPFRTPVSGKGGRIYSKSKVSKGNVCGPQTPVSNAGSPSTLTPAGNCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDVSRPGEVDDDVTILQAEVENLSLEERRLDDHIREMQEKLRDLSEDENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNGTPPPLSFPLASSSGSNENPSTEVVIADSSGKELEPQDGYQMCSDLTASQEFIGGIMKIVPDVDSDADYWLRSDAEVSITDMWKTDSYVEWNGVDMLNAEFGMADVSTPLPQTPPSGLTEGPSTAVNPTHR* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16621526 16626844 + Vvi8g917 Vvi8g917 791140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g917 466 MobiDBLite consensus disorder prediction 341 357 - -
Vvi8g917 466 MobiDBLite consensus disorder prediction 441 466 - -
Vvi8g917 466 SUPERFAMILY Winged helix DNA-binding domain 144 207 IPR036390 -
Vvi8g917 466 MobiDBLite consensus disorder prediction 444 466 - -
Vvi8g917 466 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Vvi8g917 466 PANTHER TRANSCRIPTION FACTOR E2FB 22 460 - -
Vvi8g917 466 Gene3D - 138 211 IPR036388 -
Vvi8g917 466 Coils Coil 225 259 - -
Vvi8g917 466 CDD E2F_DD 220 326 IPR032198 GO:0046983
Vvi8g917 466 MobiDBLite consensus disorder prediction 1 83 - -
Vvi8g917 466 Coils Coil 160 180 - -
Vvi8g917 466 Gene3D - 216 326 - -
Vvi8g917 466 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Vvi8g917 466 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Vvi8g917 466 PANTHER TRANSCRIPTION FACTOR E2F 22 460 IPR015633 GO:0000978|GO:0006357
Vvi8g917 466 SUPERFAMILY E2F-DP heterodimerization region 221 326 IPR037241 -
Vvi8g917 466 MobiDBLite consensus disorder prediction 333 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1278 Vvi8g917 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15203 PF16421 E2F_CC-MB 1.10E-35 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g917 K06620 - vvi:100249486 923.694