Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g917 ATGTCTGGACCTCGAGCTCCCACCCGCTCCGCGCCTCCGCCGCCTTCCTCTGGTCAGATCCTGCGGCCGATGAAGCGTCACCTCCCCTTCACGTCTACCAAGCCGCCGTTCGTCCCTCCTGACGATTACCACCGGTTTTCGTCTGCCGATGCTCACGGGGTTGCCAATCACGAACCTGAAGGCATTGTCGTCAAGTCCCCTCAATTGAAGCGGAAAAGTGCAATGGATGACAATGAAGTCGGATCTAGTGAATGGACTGCCAGTCCTGGATATGCTGATGCAGGTAACAGTCCCTTTCGAACTCCTGTTTCTGGAAAAGGGGGAAGGATATACAGCAAGTCAAAGGTCTCAAAGGGCAATGTATGTGGACCTCAGACCCCTGTGTCAAATGCTGGTTCCCCTTCTACTCTTACTCCAGCTGGCAACTGCCGCTATGACAGTTCGCTAGGTCTTTTAACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGTATTCTTGACCTAAACAAAGCTGCTGAGACTTTGGAGGTTCAGAAGAGGCGGATATATGACATAACAAATGTTCTGGAAGGAATTGGTCTCATTGAAAAGAAGCTCAAGAACAGGATCCGCTGGAAGGGGCTTGATGTTTCAAGGCCAGGGGAGGTTGATGATGATGTCACCATTTTACAGGCAGAAGTTGAAAACCTTTCCCTGGAAGAACGCAGATTAGATGATCACATCAGGGAAATGCAGGAAAAGTTGAGGGATTTGAGCGAAGATGAAAACAATCAAAAGTGGCTTTTTGTGACTGAAGATGACATCAAGGGCCTACCCTGCTTTCAGAATGAGACCCTTATAGCAATTAAAGCTCCACATGGGACCACTCTGGAAGTTCCAGATCCTGATGAGGCTGTTGACTATCCACAGAGAAGATATCGTATAGTCCTTAGAAGCACAATGGGTCCAATCGATGTCTACCTTGTCAGTCAATTTGAGGAAAAATTTGAGGAGATGAATGGGACTCCGCCTCCTTTGAGCTTTCCTCTTGCATCAAGTTCAGGGTCTAATGAGAACCCATCAACAGAGGTCGTCATTGCTGATAGCAGTGGGAAGGAACTTGAACCTCAAGATGGTTATCAAATGTGTTCTGATCTTACTGCATCACAGGAGTTTATCGGAGGAATCATGAAGATCGTTCCTGATGTTGATAGTGATGCTGATTACTGGCTTCGATCAGATGCAGAAGTTAGCATTACAGATATGTGGAAGACAGACTCGTATGTTGAATGGAATGGAGTGGATATGCTTAACGCAGAGTTTGGAATGGCTGATGTCAGTACTCCACTGCCTCAAACACCTCCATCTGGCCTTACCGAGGGGCCGTCTACTGCTGTTAACCCTACACATAGGTGA 1401 47.32 MSGPRAPTRSAPPPPSSGQILRPMKRHLPFTSTKPPFVPPDDYHRFSSADAHGVANHEPEGIVVKSPQLKRKSAMDDNEVGSSEWTASPGYADAGNSPFRTPVSGKGGRIYSKSKVSKGNVCGPQTPVSNAGSPSTLTPAGNCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDVSRPGEVDDDVTILQAEVENLSLEERRLDDHIREMQEKLRDLSEDENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNGTPPPLSFPLASSSGSNENPSTEVVIADSSGKELEPQDGYQMCSDLTASQEFIGGIMKIVPDVDSDADYWLRSDAEVSITDMWKTDSYVEWNGVDMLNAEFGMADVSTPLPQTPPSGLTEGPSTAVNPTHR* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16621526 16626844 + Vvi8g917 Vvi8g917 791140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g917 466 MobiDBLite consensus disorder prediction 341 357 - -
Vvi8g917 466 MobiDBLite consensus disorder prediction 441 466 - -
Vvi8g917 466 SUPERFAMILY Winged helix DNA-binding domain 144 207 IPR036390 -
Vvi8g917 466 MobiDBLite consensus disorder prediction 444 466 - -
Vvi8g917 466 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Vvi8g917 466 PANTHER TRANSCRIPTION FACTOR E2FB 22 460 - -
Vvi8g917 466 Gene3D - 138 211 IPR036388 -
Vvi8g917 466 Coils Coil 225 259 - -
Vvi8g917 466 CDD E2F_DD 220 326 IPR032198 GO:0046983
Vvi8g917 466 MobiDBLite consensus disorder prediction 1 83 - -
Vvi8g917 466 Coils Coil 160 180 - -
Vvi8g917 466 Gene3D - 216 326 - -
Vvi8g917 466 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Vvi8g917 466 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Vvi8g917 466 PANTHER TRANSCRIPTION FACTOR E2F 22 460 IPR015633 GO:0000978|GO:0006357
Vvi8g917 466 SUPERFAMILY E2F-DP heterodimerization region 221 326 IPR037241 -
Vvi8g917 466 MobiDBLite consensus disorder prediction 333 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g917 K06620 E2F3; transcription factor E2F3 - vvi:100249486 923.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g1278 Vvi8g917 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15203 PF16421 E2F_CC-MB 1.10E-35 No_clan Vvi TF