Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi8g941 | ATGTTCGAGAAGCCCTTAACTCCTAGCGACGTAGGTAAGCTTAACCGACTAGTCATACCAAAACAACACGCGGAGAAGTACTTCCCGCTGGGCGGTGACTCGGGCGAGAAAGGCTTGTTACTGAGTTTCGAAGACGAGTGTGGCAAGTGTTGGAGGTTTCGATACTCGTATTGGAACAGTAGCCAAAGTTATGTATTGACGAAAGGGTGGAGCCGTTTCGTCAAAGAAAAGAGGCTGGATGCAGGCGACGTCGTTTTGTTCCAGCGAGACCGCTCCGACGCTGACCGCTTCTTTATTGGTTGGAGGCGCCGTGCTGGCCCTGCGCAGGATAACCCTGCGGCGGCTCCCCCTGTCGCTGTTCACACCAATACTGGCAATACTTCTGTGGGGTGGACCAGGGTGTTCTATTCTGCGCATGCTTATCCTTCGCATCCCCATGCCCCTCCCCTACCATACCAACCTGACTGTCTTCATGCAGGGTCGGTTGCAAAGAATCAAACGACGCCGGTGGGGAACTCAAAGAGACTCAGGCTGTTTGGGGTGAACCTGGAGTGCCAAATGGATGAGTCCGAACCATCCACTCCTGACGGTTCCTCATTGTCGAGCCAGGGGCCAGTGCACCACCAATTTTACCCTCAAGCTTACTCTTCCAACGCATACAACCACATGGATATCAATTTCTCCCGAGACGTCAACCAGATGAGAGATCACCGAGGATAA | 720 | 53.19 | MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGDSGEKGLLLSFEDECGKCWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFQRDRSDADRFFIGWRRRAGPAQDNPAAAPPVAVHTNTGNTSVGWTRVFYSAHAYPSHPHAPPLPYQPDCLHAGSVAKNQTTPVGNSKRLRLFGVNLECQMDESEPSTPDGSSLSSQGPVHHQFYPQAYSSNAYNHMDINFSRDVNQMRDHRG* | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 16861284 | 16864429 | + | Vvi8g941 | Vvi8g941 | 791164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi8g941 | 239 | ProSiteProfiles | B3 DNA-binding domain profile. | 2 | 105 | IPR003340 | GO:0003677 | |
| Vvi8g941 | 239 | CDD | B3_DNA | 1 | 93 | IPR003340 | GO:0003677 | |
| Vvi8g941 | 239 | Gene3D | - | 1 | 111 | IPR015300 | - | |
| Vvi8g941 | 239 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 225 | IPR044800 | GO:0003700 | |
| Vvi8g941 | 239 | PANTHER | - | 1 | 225 | - | - | |
| Vvi8g941 | 239 | SUPERFAMILY | DNA-binding pseudobarrel domain | 1 | 105 | IPR015300 | - | |
| Vvi8g941 | 239 | SMART | B3_2 | 2 | 105 | IPR003340 | GO:0003677 | |
| Vvi8g941 | 239 | MobiDBLite | consensus disorder prediction | 187 | 207 | - | - | |
| Vvi8g941 | 239 | Pfam | B3 DNA binding domain | 2 | 104 | IPR003340 | GO:0003677 |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15204 | PF02362 | B3 | 1.20E-29 | CL0405 | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi8g941 | - | - | vvi:100245964 | 487.648 |