Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi8g979 | ATGGATACATCAAACCCTGCAGTTTTTGTCAATATGGAGCTGCTGCGCATGTATGTGGGAAGAAAGGTTCGAGCAGTGATTCAGGTTATACGATCTGAAGGTGGAGTCATAATTGGAAAATCTACAGATGAACAACAGCTGGTCATAAAAGGAACCCCACCATCCTTTCCTCTAACAACTTTTGTTGAGGTAATTGGTATTGCAGACAGTAACCAATCCATCCGGGCTGAAATATGGACCAACTTTGGTGACACATTTGACACGTATGCATACAATCAGCTTTGCCAACTTGCAAATGGGGAATATAAACACTTGTTTCTCTGA | 324 | 41.67 | MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTPPSFPLTTFVEVIGIADSNQSIRAEIWTNFGDTFDTYAYNQLCQLANGEYKHLFL* | 108 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 17199707 | 17201882 | + | Vvi8g979 | Vvi8g979 | 791202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi8g979 | 107 | PANTHER | REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED | 1 | 107 | - | - | |
| Vvi8g979 | 107 | Gene3D | - | 1 | 107 | IPR012340 | - | |
| Vvi8g979 | 107 | SUPERFAMILY | Nucleic acid-binding proteins | 6 | 106 | IPR012340 | - | |
| Vvi8g979 | 107 | CDD | RPA3 | 6 | 99 | - | - | |
| Vvi8g979 | 107 | PANTHER | REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED | 1 | 107 | - | - | |
| Vvi8g979 | 107 | Pfam | Replication factor A protein 3 | 1 | 101 | IPR013970 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 |
Event-related genes
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi8g979 | K10740 | - | vvi:100264936 | 216.468 |