Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g979 ATGGATACATCAAACCCTGCAGTTTTTGTCAATATGGAGCTGCTGCGCATGTATGTGGGAAGAAAGGTTCGAGCAGTGATTCAGGTTATACGATCTGAAGGTGGAGTCATAATTGGAAAATCTACAGATGAACAACAGCTGGTCATAAAAGGAACCCCACCATCCTTTCCTCTAACAACTTTTGTTGAGGTAATTGGTATTGCAGACAGTAACCAATCCATCCGGGCTGAAATATGGACCAACTTTGGTGACACATTTGACACGTATGCATACAATCAGCTTTGCCAACTTGCAAATGGGGAATATAAACACTTGTTTCTCTGA 324 41.67 MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTPPSFPLTTFVEVIGIADSNQSIRAEIWTNFGDTFDTYAYNQLCQLANGEYKHLFL* 108
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 17199707 17201882 + Vvi8g979 Vvi8g979 791202
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g979 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Vvi8g979 107 Gene3D - 1 107 IPR012340 -
Vvi8g979 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Vvi8g979 107 CDD RPA3 6 99 - -
Vvi8g979 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Vvi8g979 107 Pfam Replication factor A protein 3 1 101 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi8g979 Vvi13g723 ECH
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g979 K10740 - vvi:100264936 216.468