Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g100 ATGAGTAATTGGCTGGGATTTTCTCTGACTCCCCACCTGAGAATCGACGAGGGTTTTGGGAGAGATGAGCAGCACCAGCAACAAGGAGGTTTCGTCATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTATCGATCCTTTCAGGCGTCCAAGTGGAAGTGAAGATTGGAGATATGAGAACGATATGGGTGGCACTGATCCAAGCGGAGAGGCTCCAAAGCTTGAAGATTTCTTGGGTTGCTGTTACTCAAATTCTTCAGATGATAGAGTGAATGTGAATGCGCCACCAAGCTTCAACTCCAATGGAGAGCTTGAAGCAGACCCACCTCCACAAATCCAACCTTATCATCATCACTACAACGAGACCCCACAAACCCTAGTCACAACAACTCAGATTCAGCAGCAGTGTGGTTCAAACCCTAGTGGCCATAATAATTGTTTTTATCATGTACCTTTTGATCATAGTGCAACTTCAGTTTCTGGGTTCAAGTCATGGTTGCGCCAAACACCATTTTCTGGGGAAAAATCTTCTTCTTCTGCTTCTGCTGATCAGCCAAACAATTGTAACTTTCAATCACTGTCACTCACAATGAAACCAGTTCCTCGGAAATCAATTGATACTTTTGGGCAAAGAACTTCTCAATATCGTGGTGTAACTAGGCACAGATGGACTGGAAGATATGAAGCCCATTTGTGGGACAACAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGGCAAGTTTATCTTGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTCTTAGTAGTTATGAGAAAGAGCTTGAAGAGATGAAGAACATGACCAGGCAAGAGTTTGTAGCCAACTTAAGAAGGAAAAGTAGTGGGTTTTCAAGAGGGGCGTCTGTGTACAGAGGAGTGACGAGACACCATCAGCATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCAGGCAACAAGGACTTGTATTTAGGAACATTCAGCACACAAGAGGAGGCTGCTGAAGCCTATGATATTGCTGCGATAAAGTTCAGAGGGACAGGTGCAGTGACCAATTTCGATATCAGTAGGTACGACGTCAAGAGGATTTGCTCGAGCTCCACCCTCATTGCCGGCGACCTTGCCAAACGGTCACCAAAAGAATCGGCTCCCCCCGCCCTGGAGGACTACAACTCTTGCGCATCCTCCACCTCGCCCCAACCCCTTCTGGCCATAACCAATGGCGAGCCCTCGGAGGAATTGCCTGACATGGTGTGGAGTTCCAACACCGAAGACCATCAGCAGCAGCAGAACACGAGCATCATAGCCACTGATACAGCGCTGGTGGCTTCAACTAGCCGGACTTCCTCGAGTCTGCACAGTCCAAAATGCCCCGGCGGTGGCAGTGGTGGACCAGGGGCTGATCAGTTTGGAGCTGGAGGTGCTGATTACCCTCAGGCATACTTCTCATTGCATGGCTCCAAGTATGAAGCCAGCAACGCCGGCGGTGATCACCCTGGGTCGGACCGGTTGAGGAATCTGGGCATGGTTCATCACCAGGTGCCCATGTTTGCACTCTGGAATGAGTGA 1629 48.74 MSNWLGFSLTPHLRIDEGFGRDEQHQQQGGFVMPLRSDGSLCVIDPFRRPSGSEDWRYENDMGGTDPSGEAPKLEDFLGCCYSNSSDDRVNVNAPPSFNSNGELEADPPPQIQPYHHHYNETPQTLVTTTQIQQQCGSNPSGHNNCFYHVPFDHSATSVSGFKSWLRQTPFSGEKSSSSASADQPNNCNFQSLSLTMKPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSSYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTGAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPALEDYNSCASSTSPQPLLAITNGEPSEELPDMVWSSNTEDHQQQQNTSIIATDTALVASTSRTSSSLHSPKCPGGGSGGPGADQFGAGGADYPQAYFSLHGSKYEASNAGGDHPGSDRLRNLGMVHHQVPMFALWNE* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1150520 1153564 - Vvi9g100 Vvi9g100 791811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g100 542 Pfam AP2 domain 315 366 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 Pfam AP2 domain 214 272 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 CDD AP2 213 282 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 ProSiteProfiles AP2/ERF domain profile. 214 280 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 MobiDBLite consensus disorder prediction 396 419 - -
Vvi9g100 542 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 PRINTS Ethylene responsive element binding protein signature 356 376 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 37 450 - -
Vvi9g100 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 450 - -
Vvi9g100 542 MobiDBLite consensus disorder prediction 465 492 - -
Vvi9g100 542 CDD AP2 315 376 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 SUPERFAMILY DNA-binding domain 315 376 IPR016177 GO:0003677
Vvi9g100 542 ProSiteProfiles AP2/ERF domain profile. 316 374 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 Gene3D AP2/ERF domain 316 376 IPR036955 GO:0003700|GO:0006355
Vvi9g100 542 Gene3D AP2/ERF domain 213 282 IPR036955 GO:0003700|GO:0006355
Vvi9g100 542 SUPERFAMILY DNA-binding domain 213 282 IPR016177 GO:0003677
Vvi9g100 542 SMART rav1_2 316 380 IPR001471 GO:0003700|GO:0006355
Vvi9g100 542 SMART rav1_2 214 286 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15208 PF00847 AP2 4.20E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g100 K09285 - vvi:100259954 1046.96