Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g1014 | ATGGAAGGGGATGTGCAGGCTGATCCTGGAAATCTTGCTGATAGTCGGGGTGCACTTACTGTTCAGCCCGGTGGCAGCGATAATCAGAATCAGCTCACTCTCTCTTTCCAGGGTCAGGTTTATGTATTTGACTCTGTGTCACCGGAAAAGGTCCAAGCTGTTCTTCTGTTATTGGGTGGCCGTGAAGTACCTCCAACCATGCCTGCTTTGTCAATAGCCGGTCATAATAGGGAACTACCTGGTACTCCACAACGGTACAATGTCCCTCATAGATTGGCCTCACTGATTAGATTCCGAGAAAAGCGTAAAGAACGTAATTTTGACAAGAAAATTCGCTATACGGTCCGTAAAGAGGTAGCACTTAGGATGCAACGGAATAAAGGTCAATTTACATCTTCAAAGTCCAATCATGATGATTCTGCATCAACGACACCAGGCTGGGAGTCAAGCTGGGGTATGGCTGGCAATGGACCCATAAATCAAGAGATTGTGTGTCGCCACTGTGGCATCAGTGAGAAATCTACTCCAATGATGCGTCGTGGACCGGAAGGGCCAAGGACACTTTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACCCTCAGGGACCTCTCAAAGGCAGCACCAGAGGCTGGACAAAGTCCTTCCTTGAACCAGACTGGAGAAAACGGAAATTTTGAGACAGATCAAATGGTTCTTGGAATGGCAGAAAATGTTAGTGATCAAGCGTGA | 735 | 47.35 | MEGDVQADPGNLADSRGALTVQPGGSDNQNQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPALSIAGHNRELPGTPQRYNVPHRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDDSASTTPGWESSWGMAGNGPINQEIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPEAGQSPSLNQTGENGNFETDQMVLGMAENVSDQA* | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 20973734 | 20988914 | - | Vvi9g1014 | Vvi9g1014 | 792725 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g1014 | 244 | Pfam | CCT motif | 91 | 133 | IPR010402 | GO:0005515 | |
Vvi9g1014 | 244 | SMART | tify_2 | 25 | 60 | IPR010399 | - | |
Vvi9g1014 | 244 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 161 | 210 | - | - | |
Vvi9g1014 | 244 | ProSiteProfiles | Tify domain profile. | 25 | 60 | IPR010399 | - | |
Vvi9g1014 | 244 | Pfam | GATA zinc finger | 165 | 201 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g1014 | 244 | ProSiteProfiles | CCT domain profile. | 91 | 133 | IPR010402 | GO:0005515 | |
Vvi9g1014 | 244 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 6 | 225 | IPR045280 | GO:0006355 | |
Vvi9g1014 | 244 | ProSitePatterns | GATA-type zinc finger domain. | 165 | 192 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g1014 | 244 | MobiDBLite | consensus disorder prediction | 212 | 226 | - | - | |
Vvi9g1014 | 244 | ProSiteProfiles | GATA-type zinc finger domain profile. | 159 | 207 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g1014 | 244 | Gene3D | - | 159 | 209 | IPR013088 | GO:0006355|GO:0008270 | |
Vvi9g1014 | 244 | MobiDBLite | consensus disorder prediction | 206 | 226 | - | - | |
Vvi9g1014 | 244 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vvi9g1014 | 244 | SMART | GATA_3 | 159 | 212 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g1014 | 244 | MobiDBLite | consensus disorder prediction | 125 | 153 | - | - | |
Vvi9g1014 | 244 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 6 | 225 | - | - | |
Vvi9g1014 | 244 | Pfam | tify domain | 27 | 59 | IPR010399 | - | |
Vvi9g1014 | 244 | CDD | ZnF_GATA | 164 | 219 | IPR000679 | GO:0006355|GO:0043565 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15210 | PF06203 | CCT | 6.30E-15 | CL0281 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g1014 | - | - | vvi:100251358 | 499.59 |