Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1014 ATGGAAGGGGATGTGCAGGCTGATCCTGGAAATCTTGCTGATAGTCGGGGTGCACTTACTGTTCAGCCCGGTGGCAGCGATAATCAGAATCAGCTCACTCTCTCTTTCCAGGGTCAGGTTTATGTATTTGACTCTGTGTCACCGGAAAAGGTCCAAGCTGTTCTTCTGTTATTGGGTGGCCGTGAAGTACCTCCAACCATGCCTGCTTTGTCAATAGCCGGTCATAATAGGGAACTACCTGGTACTCCACAACGGTACAATGTCCCTCATAGATTGGCCTCACTGATTAGATTCCGAGAAAAGCGTAAAGAACGTAATTTTGACAAGAAAATTCGCTATACGGTCCGTAAAGAGGTAGCACTTAGGATGCAACGGAATAAAGGTCAATTTACATCTTCAAAGTCCAATCATGATGATTCTGCATCAACGACACCAGGCTGGGAGTCAAGCTGGGGTATGGCTGGCAATGGACCCATAAATCAAGAGATTGTGTGTCGCCACTGTGGCATCAGTGAGAAATCTACTCCAATGATGCGTCGTGGACCGGAAGGGCCAAGGACACTTTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACCCTCAGGGACCTCTCAAAGGCAGCACCAGAGGCTGGACAAAGTCCTTCCTTGAACCAGACTGGAGAAAACGGAAATTTTGAGACAGATCAAATGGTTCTTGGAATGGCAGAAAATGTTAGTGATCAAGCGTGA 735 47.35 MEGDVQADPGNLADSRGALTVQPGGSDNQNQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPALSIAGHNRELPGTPQRYNVPHRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDDSASTTPGWESSWGMAGNGPINQEIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPEAGQSPSLNQTGENGNFETDQMVLGMAENVSDQA* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20973734 20988914 - Vvi9g1014 Vvi9g1014 792725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1014 244 Pfam CCT motif 91 133 IPR010402 GO:0005515
Vvi9g1014 244 SMART tify_2 25 60 IPR010399 -
Vvi9g1014 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 210 - -
Vvi9g1014 244 ProSiteProfiles Tify domain profile. 25 60 IPR010399 -
Vvi9g1014 244 Pfam GATA zinc finger 165 201 IPR000679 GO:0006355|GO:0043565
Vvi9g1014 244 ProSiteProfiles CCT domain profile. 91 133 IPR010402 GO:0005515
Vvi9g1014 244 PANTHER GATA TRANSCRIPTION FACTOR 28 6 225 IPR045280 GO:0006355
Vvi9g1014 244 ProSitePatterns GATA-type zinc finger domain. 165 192 IPR000679 GO:0006355|GO:0043565
Vvi9g1014 244 MobiDBLite consensus disorder prediction 212 226 - -
Vvi9g1014 244 ProSiteProfiles GATA-type zinc finger domain profile. 159 207 IPR000679 GO:0006355|GO:0043565
Vvi9g1014 244 Gene3D - 159 209 IPR013088 GO:0006355|GO:0008270
Vvi9g1014 244 MobiDBLite consensus disorder prediction 206 226 - -
Vvi9g1014 244 MobiDBLite consensus disorder prediction 1 26 - -
Vvi9g1014 244 SMART GATA_3 159 212 IPR000679 GO:0006355|GO:0043565
Vvi9g1014 244 MobiDBLite consensus disorder prediction 125 153 - -
Vvi9g1014 244 PANTHER GATA TRANSCRIPTION FACTOR 28 6 225 - -
Vvi9g1014 244 Pfam tify domain 27 59 IPR010399 -
Vvi9g1014 244 CDD ZnF_GATA 164 219 IPR000679 GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15210 PF06203 CCT 6.30E-15 CL0281 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1014 - - vvi:100251358 499.59