Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1050 ATGCAATTAGTATCAAATGATCGTCAGACAGAAGATGGTTCTGAAACAGAACCTATCTTATGTCAATCCAACATTGAGCAAAGATTAGAGGAATCTTCAACTTCATGTGAAATTAGAACTGTGGAAGTTGATTGTTCCATAGTTGATGGGGACTTGGAAAATCTTGACACAGATGAAAATTGTGCTTTGGTGAATGCAGACCAACCACAATGCCGCATATGTCTTGATATTGGAGGAGAAGACTTGATTGCGCCATGCCATTGCAGAGGGACCCAAAAGTATGTCCACAGGTCATGTCTCGACAATTGGAGGTCAACTAAGGAGGGCTTTGCTTTTGCTCACTGTACAGAGTGCCGTGCAGTGTTTATATTACGTGCAAATGTCCCACCTGATCGCTGGTGGTTGAGATTGAAATTTCAGTTACTTGTTGCCAGAGACCATGCATTCATTTTTGTCATTGTTCAGCTGATTGTGGCATTCTTGGGTGTGCTGGTGTACAAATTTTATGGAGAGGAACTAAGAGAAATGTTTGGTTATGATGAACACCCATATGGCTTTTATACGATGGCTGTTTTAGCTATTGTCTTGGTGGGTTTGCTCTATGGTTTCTTCATAGCCATTATTTGTGGACAGAGAATCAATGAGCGCCATTACCATGTTCTAGCCAAACAAGAACTAACAAAGGAGTATGTGGTTGAGGACCGAGAAGTTAATAAGGATGTCCCTGAACTCGACCCTAGCCATGTGACAGAGCTGAGAATGTTGGGACTTTATTAA 777 41.57 MQLVSNDRQTEDGSETEPILCQSNIEQRLEESSTSCEIRTVEVDCSIVDGDLENLDTDENCALVNADQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAVFILRANVPPDRWWLRLKFQLLVARDHAFIFVIVQLIVAFLGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREVNKDVPELDPSHVTELRMLGLY* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21846621 21854752 + Vvi9g1050 Vvi9g1050 792761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1050 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 123 IPR013083 -
Vvi9g1050 258 CDD RING_CH-C4HC3_MARCH 71 119 - -
Vvi9g1050 258 SUPERFAMILY RING/U-box 66 122 - -
Vvi9g1050 258 ProSiteProfiles Zinc finger RING-CH-type profile. 63 125 IPR011016 GO:0008270
Vvi9g1050 258 Pfam RING-variant domain 71 118 IPR011016 GO:0008270
Vvi9g1050 258 PANTHER OS02G0132300 PROTEIN 2 257 - -
Vvi9g1050 258 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 257 - -
Vvi9g1050 258 SMART ringv_2 70 119 IPR011016 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1050 - - vvi:100251272 535.028