Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1056 ATGTGGAATCCAAAGGGACATATAGAGAAGCAAGGAGGAAGAGGCATAGTTGCAGTGGCCATAGACAGGGATAAAGGGAGCCAACATGCTTTGAGATGGGCTACTGAGCGTCTTCTCACCAAGGGCCAAACTGTAGTTCTCATCCATGTCCTAAAAATATCGCCTACAAGTATAGAACATCATCCTGTGAGTTCTCACAAAGAAAAGATGAATGTAAAGGATCTGTTTGTCACCTTCCATTGCTTTTGTAGACGTAAAGATATACATTGTCTAGATATTTTACTTGAAGATACGGATATACCAAGAGCATTAATAGAATTCACTAATCATGCTGCAGTCGATAACTTGATTCTTGGTGCTTCATCAAAGTACAGTTTCATCAGAAGATTCAAGATCTCAGATGTTCCAGGCAGTGTATCCAAAGGAGCAGCAGATTTCTGCACCGTGTACGTCATCTCAAAAGGAAAGATATCTTCTGTGAGAAATGCTTCTCGTACAGCCCCTCACGTTTCCCCTCTTCATAGCCATATCCAGAACAAAGTTAACAACAATGCTATTGCTAATCCCGTTGAAGCACCATCAAGTCATAGTATTAGCATAAGAGCGGAAAAGATATCAAGCAAGCCTCATAGCATACAAGACGACAGGGAATCGTTCAAGTCACCATTTTTAAGAGGAGGAAGAGCTTCAAATGCAAAGCTGGGCTCTGAGCCATTAGAATTAGATACAGACATATCATTTATTAGCTCTGAGCGACCAAGTAGCGACCGCATGTCCAATGTTGTCTATGAGTATATGGATTCAGGTCCAACCCCTCGGATCTCATCTAGCTCAGACCATAGCTTTGGATCAATTCGCATAGGACCCGCATTTGGTGATCCCAACTCACTTAATTTCTCATCAATTTCACAGGAGAGCGGAAGGACCTCATGTTCATCAACGAGCATGGTAAAGGTGGAAGCTGAGATGAGAAGGCTGAAGCTAGAGCTGAAGCAAACAATGGACATGTATAGTACAGCTTGCAAGGAAGCACTGTCAGCAAAACAGAAGGCAGTGGAGCTGCAACGCTGGAGGATGGAAGAAGAGCGGAGATTAGAAGAGGCACGATTGGCTGAGGAAGCTGCCATGGCAATTGTAGAGAAGGAAAAAGCTAAGTGCCGAGCAGCCATAGATGCAGCTGAAGCATCTCAGAGGCTTGCAGAACTGGAATCACAAAGGAGAGACATGAAGAAGGTAATTAACAATCTAGCCCAAAATGATATCAGGTACAGGAAATACACGATTGAAGAGATTGAAGAAGCAACAGAGTTTTTTTCTGAATCTCGAAAGATTGGGGAAGGGGGTTATGGCCGTGTCTATAAGTGTTATCTTGATCATACACCGGTAGCAGTTAAGGTTTTGCGTCCAGATGCCTCCCAAGGAAGGTCACAGTTTCAGAAAGAGGTTGAAATATTGAGTTGCATAAGGCATCCTAATATGGTACTCCTCCTCGGAGCCTGCCCAGAGTATGGCTGTCTGGTCTACGAATGCATGGCTAAAGGAAGTTTAGATGACCGTCTATTTCAGCTGGGTAACACCCCACCTCTCTCTTGGCAACTCAGGTTTCGAATCTCTGCAGAGATTGCCACTGGCCTGCTTTTTCTCCACCAGACCAAGCCAGAGCCACTAGTGCACCGTGACCTCAAGCCTGGCAACATTTTGCTAGACTACAACTATGTCAGTAAGATTAGCGATGTAGGATTGGCAAGGCTTGTACCCCGTTCTTATCAACATACAGGAGTGCTCGATGTAAAATCTGATGTCTATTCCTTTGGAATCATGCTTCTACAAGTGATAACAGCCAAGCCACCAATGGGCTTGACTCACCAAGTTGAGCAGGCCATTGAGAACGGAACATTCAAGGAGATATTGGACCCGGCAGTGCCTGATTGGCCAGTTGAAGAAGCCTTGAGCTTTGCAAAGATGGCACTTCAATGTGCAGAGCTAAGGCGGAAAGACAGACCAGATCTGGGTAAGGTTATCTTGCCAGAGCTTAACAGATTGAGGGAACTTGCCGAAGAAAACATGAACCAAACAATGTGGGACAGAATGGCAGACCCTTCCGGGCCTTCCCCTATTCACAGCCAAGTTTCCATGGCACAGGATGTGATTAGCAACCCTCATCTAGAGCATTCAGGATACAGCTCTAAGAGCCACTCAAGCACACCATCAATGACAGGAAGACAATAA 2229 44.91 MWNPKGHIEKQGGRGIVAVAIDRDKGSQHALRWATERLLTKGQTVVLIHVLKISPTSIEHHPVSSHKEKMNVKDLFVTFHCFCRRKDIHCLDILLEDTDIPRALIEFTNHAAVDNLILGASSKYSFIRRFKISDVPGSVSKGAADFCTVYVISKGKISSVRNASRTAPHVSPLHSHIQNKVNNNAIANPVEAPSSHSISIRAEKISSKPHSIQDDRESFKSPFLRGGRASNAKLGSEPLELDTDISFISSERPSSDRMSNVVYEYMDSGPTPRISSSSDHSFGSIRIGPAFGDPNSLNFSSISQESGRTSCSSTSMVKVEAEMRRLKLELKQTMDMYSTACKEALSAKQKAVELQRWRMEEERRLEEARLAEEAAMAIVEKEKAKCRAAIDAAEASQRLAELESQRRDMKKVINNLAQNDIRYRKYTIEEIEEATEFFSESRKIGEGGYGRVYKCYLDHTPVAVKVLRPDASQGRSQFQKEVEILSCIRHPNMVLLLGACPEYGCLVYECMAKGSLDDRLFQLGNTPPLSWQLRFRISAEIATGLLFLHQTKPEPLVHRDLKPGNILLDYNYVSKISDVGLARLVPRSYQHTGVLDVKSDVYSFGIMLLQVITAKPPMGLTHQVEQAIENGTFKEILDPAVPDWPVEEALSFAKMALQCAELRRKDRPDLGKVILPELNRLRELAEENMNQTMWDRMADPSGPSPIHSQVSMAQDVISNPHLEHSGYSSKSHSSTPSMTGRQ* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21902964 21913480 - Vvi9g1056 Vvi9g1056 792767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1056 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 150 - -
Vvi9g1056 742 SUPERFAMILY Protein kinase-like (PK-like) 421 673 IPR011009 -
Vvi9g1056 742 Coils Coil 376 419 - -
Vvi9g1056 742 ProSiteProfiles Protein kinase domain profile. 438 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1056 742 Pfam Universal stress protein family 17 135 IPR006016 -
Vvi9g1056 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
Vvi9g1056 742 MobiDBLite consensus disorder prediction 717 742 - -
Vvi9g1056 742 Coils Coil 316 336 - -
Vvi9g1056 742 Gene3D HUPs 16 152 IPR014729 -
Vvi9g1056 742 Gene3D Transferase(Phosphotransferase) domain 1 511 699 - -
Vvi9g1056 742 CDD STK_N 16 155 - -
Vvi9g1056 742 Pfam Protein kinase domain 439 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1056 742 Gene3D Phosphorylase Kinase; domain 1 416 510 - -
Vvi9g1056 742 SMART serkin_6 438 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1056 742 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 14 735 - -
Vvi9g1056 742 PANTHER OS02G0152300 PROTEIN 14 735 - -
Vvi9g1056 742 ProSitePatterns Protein kinases ATP-binding region signature. 444 465 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g245 Vvi9g1056 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76835 PF07714 PK_Tyr_Ser-Thr 1.60E-31 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1056 - - vvi:100266704 1343.56