Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g1107 | ATGTGCCCTAGCCTCCTAGTGTTAATGGGTGTGGCCTTTTTTGGGATCCTCACTCCAATTGCCCACTCCACCACAGTTGCTCCTGATGTCTCTGCCCTCAATGTTATGTATAACAGCTTGAACTCTCCTTCACAGCTGACTGGTTGGAAGTCGAGTGGAGGTGATCCTTGTGGGGAATCCTGGAAAGGAATCAAATGCTCGGGCTCATCTATAACTGAAATAAAATTATCTGGCCTTGGACTCACTGGATCGATGGGCTACCAGCTGTCAAGCTTGACATCCGTCACCAACTTTGACATGAGCAAGAACAACCTCAAGGGTGATATACCATATCAACTACCTCCTAATGTACTTCACTTAGATCTTTCTCGAAATGGTTTCACCGGTGGGGTTCCTTATTCGATTTCTCAGATGACTGACCTTAAATATCTAAATCTTGGTCATAATAAACTCAATGGACAGTTAAGTGATATGTTTGGACAACTCCCTAAACTCACTTTGATGGATCTCTCCTTCAATACACTATCAGACAATTTGCCTCAGAGTTTTGGATCACTCTCAAGCCTCACCACATTGCGTTTGCAGAACAATCAATTTACTGGTTCAATAAATGTCCTTGCTGACCTTCCCCTCAATGATTTGAATATTGAAAACAACCAATTTACTGGCTGGATCCCAAATGCATTGAATAATATAGATAATATAGAGGCTGGGGGAAATTCCTGGTCATCTGAGCAAGCTCCTCCACCTCCCCCTGGTGCAAGTTCAAAAAATACTCATGCTAGTAGGAGCTCATCCAACAGTGGAAAAGGTGGTGGGAAGTCTGGCATGAGTGGATTAGCCATTGCTGGAGTAGTTTTGGGAAGTTTGCTGGTACTAGTTATTCTACTTGCTCTATTTTCAAGACGATCTTCTCCTCCTCCTTCACATTTTCTTGATGAAGAGAGGCTTAGCAATCATAGACCATTTACCCCGATTGTATCCCAGGAGTTATCCAATGACATGCATCCCACAAACTACAATGGTAATTTTCATTTACACCTGTACTTTAAGTCGTCGAACTCATCTAATTCAATGGATGTAAAGGCTTTGCAAAAATCTCCTTCTATTGGTCTTAAGCGTCCACCTTCTCTTAATGATTTGGCAAATCGCTTGAGTGTCAAAAGAAGTACTTCTATTCGTGCTACAGCTTATTCCTTGGCGGATTTACAGAGTGCCACTAGAAACTTTGCAACAGCCAGCCTTCTTGGTGAGGGATCTGTTGGGCGTGTTTATAAGGCAAAGTATGCTGACGGAAAGGTGTTGGCTGTAAAAAAGATAAGCTCCTCCTTTTTCCAAAGTGGCCAGAAGCAAGGTTTTCCTGAAGTTGTTTCAAGTGTCTCCAAGCTTCGCCATCCAAATATTGCTGAAATTGTTGGTTATTGTTCAGAACAAGGGCATAACATGTTAATGTATGAGTATTTCAGAAATGGCTCACTACATCAGTTCTTACACCTGTCAGATGATTTCAGCAGACCACTTACTTGGAACACCAGAGTCAAAATTGCTCTTGGCACAGCCCGGGCTATTGAGTACCTCCATGAGGTTTGCTCTCCACCCATGGTTCACAAGAACATCAAGTCTTCTAATATCTTGCTTGATGCTGAACTCAATCCCCATCTCTCTGACTATGGGTTTGCTGCTTGTCATCAGCATACGAGCCAAAACCTAGGGGTTGGATATAATGCTCCAGAATGCACAAAGCCTTTGGCTTATACGTTGAAGAGTGATGTTTATAGTTTTGGAGTAGTCATGTTGGAGGTAATGACAGGTCGGATGCCTTTTGACAGTTCAAGACCAAGATCGGAACAATGCCTTGTCCGATGGGCCACCCCACAGCTCCATGAAATTGATTCACTAGAACAAATGGTGGACCCTGCTTTGCGTGGTTTGTACCCTCCTAAGTCACTCTCTCGATTTGCAGATATCATTGCTCTCTGTGTACAGATGGAGCCTGACTTCCGGCCAGCCATGTCAGAGGTGGTGCAGAGTTTAGCTCGATTGATTCAAGGGGCTTCTCGTCGGATGGAAGACTTCAACTATTGA | 2085 | 43.55 | MCPSLLVLMGVAFFGILTPIAHSTTVAPDVSALNVMYNSLNSPSQLTGWKSSGGDPCGESWKGIKCSGSSITEIKLSGLGLTGSMGYQLSSLTSVTNFDMSKNNLKGDIPYQLPPNVLHLDLSRNGFTGGVPYSISQMTDLKYLNLGHNKLNGQLSDMFGQLPKLTLMDLSFNTLSDNLPQSFGSLSSLTTLRLQNNQFTGSINVLADLPLNDLNIENNQFTGWIPNALNNIDNIEAGGNSWSSEQAPPPPPGASSKNTHASRSSSNSGKGGGKSGMSGLAIAGVVLGSLLVLVILLALFSRRSSPPPSHFLDEERLSNHRPFTPIVSQELSNDMHPTNYNGNFHLHLYFKSSNSSNSMDVKALQKSPSIGLKRPPSLNDLANRLSVKRSTSIRATAYSLADLQSATRNFATASLLGEGSVGRVYKAKYADGKVLAVKKISSSFFQSGQKQGFPEVVSSVSKLRHPNIAEIVGYCSEQGHNMLMYEYFRNGSLHQFLHLSDDFSRPLTWNTRVKIALGTARAIEYLHEVCSPPMVHKNIKSSNILLDAELNPHLSDYGFAACHQHTSQNLGVGYNAPECTKPLAYTLKSDVYSFGVVMLEVMTGRMPFDSSRPRSEQCLVRWATPQLHEIDSLEQMVDPALRGLYPPKSLSRFADIIALCVQMEPDFRPAMSEVVQSLARLIQGASRRMEDFNY* | 695 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 22579544 | 22596265 | - | Vvi9g1107 | Vvi9g1107 | 792818 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g1107 | 694 | SMART | serkin_6 | 410 | 682 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi9g1107 | 694 | Pfam | Protein tyrosine and serine/threonine kinase | 414 | 678 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi9g1107 | 694 | Gene3D | Transferase(Phosphotransferase) domain 1 | 488 | 692 | - | - | |
Vvi9g1107 | 694 | PANTHER | OS01G0253100 PROTEIN | 17 | 690 | IPR045271 | GO:0004714|GO:0006468 | |
Vvi9g1107 | 694 | MobiDBLite | consensus disorder prediction | 256 | 273 | - | - | |
Vvi9g1107 | 694 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 | 17 | 690 | - | - | |
Vvi9g1107 | 694 | SUPERFAMILY | L domain-like | 25 | 235 | - | - | |
Vvi9g1107 | 694 | Pfam | Leucine rich repeat | 116 | 175 | IPR001611 | GO:0005515 | |
Vvi9g1107 | 694 | ProSiteProfiles | Protein kinase domain profile. | 410 | 681 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi9g1107 | 694 | Gene3D | Phosphorylase Kinase; domain 1 | 378 | 487 | - | - | |
Vvi9g1107 | 694 | SUPERFAMILY | Protein kinase-like (PK-like) | 390 | 678 | IPR011009 | - | |
Vvi9g1107 | 694 | Pfam | Leucine rich repeat N-terminal domain | 28 | 67 | IPR013210 | - | |
Vvi9g1107 | 694 | Gene3D | Ribonuclease Inhibitor | 26 | 281 | IPR032675 | - | |
Vvi9g1107 | 694 | MobiDBLite | consensus disorder prediction | 236 | 274 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76837 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-41 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g1107 | - | - | vvi:100254729 | 1301.96 |