Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1107 ATGTGCCCTAGCCTCCTAGTGTTAATGGGTGTGGCCTTTTTTGGGATCCTCACTCCAATTGCCCACTCCACCACAGTTGCTCCTGATGTCTCTGCCCTCAATGTTATGTATAACAGCTTGAACTCTCCTTCACAGCTGACTGGTTGGAAGTCGAGTGGAGGTGATCCTTGTGGGGAATCCTGGAAAGGAATCAAATGCTCGGGCTCATCTATAACTGAAATAAAATTATCTGGCCTTGGACTCACTGGATCGATGGGCTACCAGCTGTCAAGCTTGACATCCGTCACCAACTTTGACATGAGCAAGAACAACCTCAAGGGTGATATACCATATCAACTACCTCCTAATGTACTTCACTTAGATCTTTCTCGAAATGGTTTCACCGGTGGGGTTCCTTATTCGATTTCTCAGATGACTGACCTTAAATATCTAAATCTTGGTCATAATAAACTCAATGGACAGTTAAGTGATATGTTTGGACAACTCCCTAAACTCACTTTGATGGATCTCTCCTTCAATACACTATCAGACAATTTGCCTCAGAGTTTTGGATCACTCTCAAGCCTCACCACATTGCGTTTGCAGAACAATCAATTTACTGGTTCAATAAATGTCCTTGCTGACCTTCCCCTCAATGATTTGAATATTGAAAACAACCAATTTACTGGCTGGATCCCAAATGCATTGAATAATATAGATAATATAGAGGCTGGGGGAAATTCCTGGTCATCTGAGCAAGCTCCTCCACCTCCCCCTGGTGCAAGTTCAAAAAATACTCATGCTAGTAGGAGCTCATCCAACAGTGGAAAAGGTGGTGGGAAGTCTGGCATGAGTGGATTAGCCATTGCTGGAGTAGTTTTGGGAAGTTTGCTGGTACTAGTTATTCTACTTGCTCTATTTTCAAGACGATCTTCTCCTCCTCCTTCACATTTTCTTGATGAAGAGAGGCTTAGCAATCATAGACCATTTACCCCGATTGTATCCCAGGAGTTATCCAATGACATGCATCCCACAAACTACAATGGTAATTTTCATTTACACCTGTACTTTAAGTCGTCGAACTCATCTAATTCAATGGATGTAAAGGCTTTGCAAAAATCTCCTTCTATTGGTCTTAAGCGTCCACCTTCTCTTAATGATTTGGCAAATCGCTTGAGTGTCAAAAGAAGTACTTCTATTCGTGCTACAGCTTATTCCTTGGCGGATTTACAGAGTGCCACTAGAAACTTTGCAACAGCCAGCCTTCTTGGTGAGGGATCTGTTGGGCGTGTTTATAAGGCAAAGTATGCTGACGGAAAGGTGTTGGCTGTAAAAAAGATAAGCTCCTCCTTTTTCCAAAGTGGCCAGAAGCAAGGTTTTCCTGAAGTTGTTTCAAGTGTCTCCAAGCTTCGCCATCCAAATATTGCTGAAATTGTTGGTTATTGTTCAGAACAAGGGCATAACATGTTAATGTATGAGTATTTCAGAAATGGCTCACTACATCAGTTCTTACACCTGTCAGATGATTTCAGCAGACCACTTACTTGGAACACCAGAGTCAAAATTGCTCTTGGCACAGCCCGGGCTATTGAGTACCTCCATGAGGTTTGCTCTCCACCCATGGTTCACAAGAACATCAAGTCTTCTAATATCTTGCTTGATGCTGAACTCAATCCCCATCTCTCTGACTATGGGTTTGCTGCTTGTCATCAGCATACGAGCCAAAACCTAGGGGTTGGATATAATGCTCCAGAATGCACAAAGCCTTTGGCTTATACGTTGAAGAGTGATGTTTATAGTTTTGGAGTAGTCATGTTGGAGGTAATGACAGGTCGGATGCCTTTTGACAGTTCAAGACCAAGATCGGAACAATGCCTTGTCCGATGGGCCACCCCACAGCTCCATGAAATTGATTCACTAGAACAAATGGTGGACCCTGCTTTGCGTGGTTTGTACCCTCCTAAGTCACTCTCTCGATTTGCAGATATCATTGCTCTCTGTGTACAGATGGAGCCTGACTTCCGGCCAGCCATGTCAGAGGTGGTGCAGAGTTTAGCTCGATTGATTCAAGGGGCTTCTCGTCGGATGGAAGACTTCAACTATTGA 2085 43.55 MCPSLLVLMGVAFFGILTPIAHSTTVAPDVSALNVMYNSLNSPSQLTGWKSSGGDPCGESWKGIKCSGSSITEIKLSGLGLTGSMGYQLSSLTSVTNFDMSKNNLKGDIPYQLPPNVLHLDLSRNGFTGGVPYSISQMTDLKYLNLGHNKLNGQLSDMFGQLPKLTLMDLSFNTLSDNLPQSFGSLSSLTTLRLQNNQFTGSINVLADLPLNDLNIENNQFTGWIPNALNNIDNIEAGGNSWSSEQAPPPPPGASSKNTHASRSSSNSGKGGGKSGMSGLAIAGVVLGSLLVLVILLALFSRRSSPPPSHFLDEERLSNHRPFTPIVSQELSNDMHPTNYNGNFHLHLYFKSSNSSNSMDVKALQKSPSIGLKRPPSLNDLANRLSVKRSTSIRATAYSLADLQSATRNFATASLLGEGSVGRVYKAKYADGKVLAVKKISSSFFQSGQKQGFPEVVSSVSKLRHPNIAEIVGYCSEQGHNMLMYEYFRNGSLHQFLHLSDDFSRPLTWNTRVKIALGTARAIEYLHEVCSPPMVHKNIKSSNILLDAELNPHLSDYGFAACHQHTSQNLGVGYNAPECTKPLAYTLKSDVYSFGVVMLEVMTGRMPFDSSRPRSEQCLVRWATPQLHEIDSLEQMVDPALRGLYPPKSLSRFADIIALCVQMEPDFRPAMSEVVQSLARLIQGASRRMEDFNY* 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22579544 22596265 - Vvi9g1107 Vvi9g1107 792818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1107 694 SMART serkin_6 410 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1107 694 Pfam Protein tyrosine and serine/threonine kinase 414 678 IPR001245 GO:0004672|GO:0006468
Vvi9g1107 694 Gene3D Transferase(Phosphotransferase) domain 1 488 692 - -
Vvi9g1107 694 PANTHER OS01G0253100 PROTEIN 17 690 IPR045271 GO:0004714|GO:0006468
Vvi9g1107 694 MobiDBLite consensus disorder prediction 256 273 - -
Vvi9g1107 694 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 17 690 - -
Vvi9g1107 694 SUPERFAMILY L domain-like 25 235 - -
Vvi9g1107 694 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Vvi9g1107 694 ProSiteProfiles Protein kinase domain profile. 410 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1107 694 Gene3D Phosphorylase Kinase; domain 1 378 487 - -
Vvi9g1107 694 SUPERFAMILY Protein kinase-like (PK-like) 390 678 IPR011009 -
Vvi9g1107 694 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vvi9g1107 694 Gene3D Ribonuclease Inhibitor 26 281 IPR032675 -
Vvi9g1107 694 MobiDBLite consensus disorder prediction 236 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1107 - - - vvi:100254729 1301.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0869 . . . . . . . Blo10g00929 . . . Bpe09g00067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g7 . 387 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.8e-84 310.8
Vvi9g1107 . 395 682 Strubbelig Receptor Gene Family AT1G11130 50.3 6.1e-80 295.8
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi9g7 . 2 703 Strubbelig Receptor Gene Family AT1G53730 63.5 8.9e-199 690.6
Vvi10randomg5 . 17 707 Strubbelig Receptor Gene Family AT1G53730 53.7 2.5e-164 576.2
Vvi9g1107 . 4 686 Strubbelig Receptor Gene Family AT1G53730 51.8 4.1e-143 505.8
Vvi9g7 . 2 695 Strubbelig Receptor Gene Family AT3G14350 56.3 2.3e-172 602.8
Vvi10randomg4 . 45 142 Strubbelig Receptor Gene Family AT3G14350 78.6 2.2e-37 154.5
Vvi10randomg5 . 217 730 Strubbelig Receptor Gene Family AT4G22130 66.3 2.1e-179 625.9
Vvi9g7 . 384 697 Strubbelig Receptor Gene Family AT4G22130 69.3 1.6e-123 440.3
Vvi12g488 . 458 781 Strubbelig Receptor Gene Family AT4G22130 56.3 6.1e-102 368.6
Vvi9g1107 . 393 691 Strubbelig Receptor Gene Family AT4G22130 58.1 2.0e-100 363.6
Vvi8g1247 . 343 699 Strubbelig Receptor Gene Family AT4G22130 52.1 3.1e-98 356.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76837 PF07714 PK_Tyr_Ser-Thr 2.70E-41 CL0016 Vvi PK