Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1111 ATGAATCACCATAGTGTTCTATCTGCAAAACAAACAGAGTCTACTAAAGGTTTTACTCAGTCTTACTGTGCTGCAGTATCCCCAATTCATAACTTACTGAATGTCGAGTTAGAAGTTCAGCCCCAGAAGCTTTGCTCAAAATCTGGACCATATAGCTCTGTGTCTTCTGATACTGATGCTCAATATCCCAAATGCACATTTTCTCGTTCTTCTGTGTTTTGTACCAGCTTATACCTGTCATCTTCATCAAGCACTGAAACCCATCGACCACTTGGAAATCTTCCATTTCTTCCTCATCCATCAATGTCCTACCAGTCCATTTCTGCTGTTCATTCAACAAAAACTCCATTTTTGAGTGGGGATTCAAGCGGTTTATATGATGAGGGGAATTCAGAGGATATGATGAAAGGCTTTCTCAATTTGTCCAGTGATGCTTCAGATGAGAGTTTTCATGTTATGAATTGTGCAAGTGACAATATAACATTTTCAGAGCAATTGGAGTTGCAGTTTTTGTCTGATGAACTTGATATAGCTATAGCTGACAACGGAGAAAATCCCAGACTTGATGAAATATATGAAATGCCTCAAGATTCATCAACACCAGCCATGGCATTAGGACTGACAGTCAATCAAAATCATCAATCTGTTGCACCATCTACTGATGCTTCATCAGGTCAACCCTCTCCAGGGGCTGCTGCTGCACACAAGCCAAGAATGAGATGGACCCCTGAGCTCCATGAGCGTTTTTTAGAGGCTGTCAATAAGCTTGAGGGGGCTGAAAAGGCAACACCAAAGGGAGTATTAAAGCTTATGAATATTGAAGGTTTGACCATTTATCATGTGAAAAGCCACTTACAGAAATACCGGCTTGCTAAGTATATGCCAGAGCGAAAGGAAGACAAGAAGGCTTCTGGATCCGAAGAAAAGAAAGCTGCTTCAAGTAACAATGAAAGTGATGGAAGGAGAAAAGGGAACATTCAAATCACTGAGGCTTTGCGCCTGCAAATGGAAGTTCAAAAACAGCTTCACGAACAGCTTGAGGTGCAAAGGACTCTTCAGTTACGCATAGAGGAGCATGCAAGGTACTTGCATAAGATCTTGGAAGAACAACAGAAGGCTGGCAGTGCCTTGATCTCTCCTCCAAGCTTGTCATCACCGACTAGCCCTCACCCAGATTCTGAAAGGCAGCCTTCTTCTCCATCAGCTACCACCACTCTCCCCCAACCAGCAGAGTGCAAAGCTGATTCCTCATCACCTCCACCATCAAAGCACAAAGCTGCTACTGAAACTACCGACTCTGAGCAGCAAGCATGCTCGAAGAGATCCCGTCTTGAATCCAACCCAGAACCAGTTTCAGATGAGGCTGTGGTTGAAAATCCCAGCCAGTGA 1389 43.56 MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEVQPQKLCSKSGPYSSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSSTETHRPLGNLPFLPHPSMSYQSISAVHSTKTPFLSGDSSGLYDEGNSEDMMKGFLNLSSDASDESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMALGLTVNQNHQSVAPSTDASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAEKATPKGVLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNESDGRRKGNIQITEALRLQMEVQKQLHEQLEVQRTLQLRIEEHARYLHKILEEQQKAGSALISPPSLSSPTSPHPDSERQPSSPSATTTLPQPAECKADSSSPPPSKHKAATETTDSEQQACSKRSRLESNPEPVSDEAVVENPSQ* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22633171 22640751 + Vvi9g1111 Vvi9g1111 792822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1111 462 MobiDBLite consensus disorder prediction 214 238 - -
Vvi9g1111 462 MobiDBLite consensus disorder prediction 373 462 - -
Vvi9g1111 462 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 37 415 IPR044848 GO:0003700
Vvi9g1111 462 MobiDBLite consensus disorder prediction 375 412 - -
Vvi9g1111 462 Gene3D - 235 294 - -
Vvi9g1111 462 MobiDBLite consensus disorder prediction 421 445 - -
Vvi9g1111 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 293 IPR017930 -
Vvi9g1111 462 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL6 37 415 - -
Vvi9g1111 462 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 236 291 IPR006447 GO:0003677
Vvi9g1111 462 Pfam Myb-like DNA-binding domain 238 289 IPR001005 -
Vvi9g1111 462 SUPERFAMILY Homeodomain-like 235 290 IPR009057 -
Vvi9g1111 462 MobiDBLite consensus disorder prediction 296 324 - -
Vvi9g1111 462 Pfam MYB-CC type transfactor, LHEQLE motif 326 373 IPR025756 -
Vvi9g1111 462 MobiDBLite consensus disorder prediction 296 317 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15214 PF00249 Myb_DNA-binding 1.60E-08 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1111 - - vvi:100244458 848.195