Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1130 ATGGCAACAAATAGGTACATTTGTGAGGTGTGTCACAAGGGATTCCAGAGAGATCAAAACCTTCAGCTCCATAGAAGAGGGCACAACTTGCCATGGAAGCTAAAGCAAAGGTCAAACACAGAGGTTAAGAAGAGGGTGTATGTGTGTCCGGAGCCCAACTGCGTGCATCATGACCCAAGCCGGGCTCTTGGTGACTTGACTGGAATAAAGAAGCACTTCTGCAGAAAGCACGGAGAGAAGCGATGGAAGTGTGACAAGTGCTCAAAACGTTATGCTGTTCAATCAGACTGGAAGGCACATACAAAGATATGTGGAACCAGAGAATATCGCTGTGATTGTGGTACAATCTTCTCTAGGAAGGACAGTTTCGTAACACATAGAGCTTTCTGTGATGCATCGGCGGCGGAAAATTATAAGGCAAACCAGCAAATTGCTGCCGCAGGAGGAACGCCACACAACCAGCCTCAAGTGCTGTTCTCTTCTTCGATGCCCACTTCGGAATCAAGCTCTGGTGCAAACATGTCGATGAATTTGTCAGTTTTCAACGAGAATATTGACAATATAACAAGGCCGGCATCTCTGAATTCACCTGGGCTTACCATATCAAATAACTTAAATCAGATTTTCAATCCAACAACTTCACAGGAATGTTTTGGCTCAGGAATTGGATCGAATAATTCTCCCATGGGTATTGGCTCCACTTACACATCCGCAACTGCCTTGTTGCAAAAAGCTGCTGAAATGGGTGCTAAGATAAGTGACAATTCTATCGCCCCAGTTCTTTTCAGAGGATTTACCGGATACTCTGTTGGCAGTACGAACTCATGTGGGTCGGTCCAGGAGACTTCTTCAGTAATTAGTTGCAGTATGGGACCAGTTTCTGCAACAGCAAATGGTTTATATGTGGGAAATCAAGAAACATTTAACAAGGACTTGGATGCAGTAGATGTAAGACCTAGCTATGCTGTTTCTCACAGTGGGTTATTCGACTCTTCTTTGTTTATGCAGATGAAAAATCAAAACCCTGCAGACCGGTTGGAAGAACTATTCATGGGCGATGGTGAGAAAATGACAGTTGACTTCTTAGGGGTGGAGCCTACTGCATATCCAAGTAATGGGAAGAAAAGAAGCTATGATGGTAACTTTATGGGTTTGGAGTATTCAAACACACAGCAAAACCTTTAA 1185 43.88 MATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSNTEVKKRVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKRWKCDKCSKRYAVQSDWKAHTKICGTREYRCDCGTIFSRKDSFVTHRAFCDASAAENYKANQQIAAAGGTPHNQPQVLFSSSMPTSESSSGANMSMNLSVFNENIDNITRPASLNSPGLTISNNLNQIFNPTTSQECFGSGIGSNNSPMGIGSTYTSATALLQKAAEMGAKISDNSIAPVLFRGFTGYSVGSTNSCGSVQETSSVISCSMGPVSATANGLYVGNQETFNKDLDAVDVRPSYAVSHSGLFDSSLFMQMKNQNPADRLEELFMGDGEKMTVDFLGVEPTAYPSNGKKRSYDGNFMGLEYSNTQQNL* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22904969 22906281 + Vvi9g1130 Vvi9g1130 792841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1130 394 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Vvi9g1130 394 PANTHER OS02G0518500 PROTEIN 1 381 - -
Vvi9g1130 394 Gene3D Classic Zinc Finger 1 52 - -
Vvi9g1130 394 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vvi9g1130 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Vvi9g1130 394 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 381 - -
Vvi9g1130 394 Gene3D Classic Zinc Finger 60 141 - -
Vvi9g1130 394 SMART c2h2final6 82 102 IPR013087 -
Vvi9g1130 394 SMART c2h2final6 47 77 IPR013087 -
Vvi9g1130 394 SMART c2h2final6 6 28 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15217 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1130 - - vvi:100258126 812.372