Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g122 ATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGATGTGGACGAATTTTATCAGCAGTGTGATCCCGAGAAGGAGAATCTGTGCCTTTATGGATTTCCAAATGAACTATGGGAAGTCAATTTACCTGCAGAAGAGGTGCCTCCAGAACTCCCAGAGCCTGCACTAGGGATCAACTTTGCAAGAGATGGAATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTGCTTGCTGTTGCCTTCTATTTTGGTGCCAGATTTGGATTTGATAAAGCTGACAGGAAGCGGCTCTTTAATATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATTCTAAGACACCACAGAAGGATGAAGATGAGGGCTTGGAAGAGGAAGAGGAAGACGAGCACGGCGAGACATTGTGTGGAGCATGTGGCGAGAACTACGCATCAGATGAGTTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCAGCTAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGCAACAAGAGATCTCGCCCCTGA 786 46.69 MDGGANYNPRTVEEVFRDFKGRRAGMIKALTTDVDEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKVVPQQQQPQQRGSESQGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1392158 1397879 + Vvi9g122 Vvi9g122 791833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g122 261 Pfam PHD-finger 208 257 IPR019787 -
Vvi9g122 261 PANTHER CPG BINDING PROTEIN 3 261 IPR045104 GO:0006355|GO:0042393
Vvi9g122 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Vvi9g122 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 261 - -
Vvi9g122 261 MobiDBLite consensus disorder prediction 145 201 - -
Vvi9g122 261 SUPERFAMILY FYVE/PHD zinc finger 197 259 IPR011011 -
Vvi9g122 261 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vvi9g122 261 MobiDBLite consensus disorder prediction 145 183 - -
Vvi9g122 261 CDD PHD_AL_plant 207 257 IPR044104 -
Vvi9g122 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 256 IPR013083 -
Vvi9g122 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Vvi9g122 261 SMART PHD_3 207 255 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g122 - - - vvi:100263503 473.396
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi9g122 Vvi11g114 ECH
Vvi4g139 Vvi9g122 ECH
Vvi9g122 Vvi11g125 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g1243 . 1 250 Alfin-like Transcription Factor Family AT1G14510 76.5 5.1e-109 391.0
Vvi4g139 ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 72.3 8.5e-96 347.1
Vvi11g114 ECH 1 249 Alfin-like Transcription Factor Family AT1G14510 68.5 5.5e-95 344.4
Vvi9g122 ECH 1 258 Alfin-like Transcription Factor Family AT1G14510 66.8 5.5e-95 344.4
Vvi8g250 ECH 8 235 Alfin-like Transcription Factor Family AT1G14510 62.4 3.2e-79 292.0
Vvi13g55 ECH 8 237 Alfin-like Transcription Factor Family AT1G14510 58.0 7.5e-76 280.8
Vvi4g139 ECH 1 254 Alfin-like Transcription Factor Family AT5G26210 78.1 2.9e-112 401.7
Vvi11g114 ECH 1 251 Alfin-like Transcription Factor Family AT5G26210 75.6 6.1e-110 394.0
Vvi9g122 ECH 1 260 Alfin-like Transcription Factor Family AT5G26210 75.4 6.8e-109 390.6
Vvi12g1243 . 10 252 Alfin-like Transcription Factor Family AT5G26210 65.4 5.8e-92 334.3
Vvi8g250 ECH 7 242 Alfin-like Transcription Factor Family AT5G26210 60.6 2.2e-83 305.8
Vvi13g55 ECH 7 239 Alfin-like Transcription Factor Family AT5G26210 58.3 5.6e-79 291.2
Vvi11g114 ECH 1 251 Alfin-like Transcription Factor Family AT3G42790 71.8 3.5e-102 368.2
Vvi9g122 ECH 1 260 Alfin-like Transcription Factor Family AT3G42790 69.8 3.0e-101 365.2
Vvi4g139 ECH 1 254 Alfin-like Transcription Factor Family AT3G42790 72.9 3.9e-101 364.8
Vvi12g1243 . 1 254 Alfin-like Transcription Factor Family AT3G42790 62.6 1.4e-90 329.7
Vvi8g250 ECH 7 240 Alfin-like Transcription Factor Family AT3G42790 61.6 6.3e-83 304.3
Vvi13g55 ECH 7 239 Alfin-like Transcription Factor Family AT3G42790 58.5 2.5e-79 292.4
Vvi8g250 ECH 1 242 Alfin-like Transcription Factor Family AT5G05610 79.8 2.8e-112 401.7
Vvi13g55 ECH 1 239 Alfin-like Transcription Factor Family AT5G05610 72.9 5.6e-105 377.5
Vvi9g122 ECH 8 260 Alfin-like Transcription Factor Family AT5G05610 64.0 2.3e-90 328.9
Vvi11g114 ECH 8 251 Alfin-like Transcription Factor Family AT5G05610 63.7 6.7e-90 327.4
Vvi4g139 ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 63.7 1.9e-89 325.9
Vvi12g1243 . 10 252 Alfin-like Transcription Factor Family AT5G05610 65.0 4.8e-88 321.2
Vvi8g250 ECH 43 242 Alfin-like Transcription Factor Family AT3G11200 77.9 2.1e-88 322.4
Vvi13g55 ECH 29 239 Alfin-like Transcription Factor Family AT3G11200 70.7 1.4e-84 309.7
Vvi4g139 ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 66.5 7.7e-75 277.3
Vvi9g122 ECH 44 260 Alfin-like Transcription Factor Family AT3G11200 63.1 1.3e-74 276.6
Vvi11g114 ECH 44 251 Alfin-like Transcription Factor Family AT3G11200 65.1 5.0e-74 274.6
Vvi12g1243 . 45 252 Alfin-like Transcription Factor Family AT3G11200 64.6 1.4e-73 273.1
Vvi12g1243 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.8 4.9e-75 278.1
Vvi9g122 ECH 1 165 Alfin-like Transcription Factor Family AT2G02470 73.9 2.1e-65 246.1
Vvi11g114 ECH 1 165 Alfin-like Transcription Factor Family AT2G02470 73.9 4.6e-65 245.0
Vvi4g139 ECH 9 158 Alfin-like Transcription Factor Family AT2G02470 78.0 1.1e-63 240.4
Vvi8g250 ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 70.2 1.1e-55 213.8
Vvi13g55 ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 64.9 4.5e-52 201.8
Vvi9g122 ECH 1 166 Alfin-like Transcription Factor Family AT5G20510 79.6 3.3e-76 281.6
Vvi11g114 ECH 1 165 Alfin-like Transcription Factor Family AT5G20510 79.5 4.8e-75 277.7
Vvi4g139 ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 78.8 9.0e-74 273.5
Vvi12g1243 . 1 163 Alfin-like Transcription Factor Family AT5G20510 72.3 6.9e-66 247.3
Vvi8g250 ECH 7 145 Alfin-like Transcription Factor Family AT5G20510 69.2 9.4e-55 210.3
Vvi13g55 ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 64.3 3.0e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15219 PF12165 Alfin 7.80E-70 No_clan Vvi TF