Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g122 ATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGATGTGGACGAATTTTATCAGCAGTGTGATCCCGAGAAGGAGAATCTGTGCCTTTATGGATTTCCAAATGAACTATGGGAAGTCAATTTACCTGCAGAAGAGGTGCCTCCAGAACTCCCAGAGCCTGCACTAGGGATCAACTTTGCAAGAGATGGAATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTGCTTGCTGTTGCCTTCTATTTTGGTGCCAGATTTGGATTTGATAAAGCTGACAGGAAGCGGCTCTTTAATATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATTCTAAGACACCACAGAAGGATGAAGATGAGGGCTTGGAAGAGGAAGAGGAAGACGAGCACGGCGAGACATTGTGTGGAGCATGTGGCGAGAACTACGCATCAGATGAGTTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCAGCTAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGCAACAAGAGATCTCGCCCCTGA 786 46.69 MDGGANYNPRTVEEVFRDFKGRRAGMIKALTTDVDEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKVVPQQQQPQQRGSESQGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1392158 1397879 + Vvi9g122 Vvi9g122 791833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g122 261 Pfam PHD-finger 208 257 IPR019787 -
Vvi9g122 261 PANTHER CPG BINDING PROTEIN 3 261 IPR045104 GO:0006355|GO:0042393
Vvi9g122 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Vvi9g122 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 261 - -
Vvi9g122 261 MobiDBLite consensus disorder prediction 145 201 - -
Vvi9g122 261 SUPERFAMILY FYVE/PHD zinc finger 197 259 IPR011011 -
Vvi9g122 261 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vvi9g122 261 MobiDBLite consensus disorder prediction 145 183 - -
Vvi9g122 261 CDD PHD_AL_plant 207 257 IPR044104 -
Vvi9g122 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 256 IPR013083 -
Vvi9g122 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Vvi9g122 261 SMART PHD_3 207 255 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g122 Vvi11g114 ECH
Vvi4g139 Vvi9g122 ECH
Vvi9g122 Vvi11g125 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15219 PF12165 Alfin 7.80E-70 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g122 - - vvi:100263503 473.396