Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g136 | ATGGCAGGTCAAGCACCAGAAGGTTCACAATTCGATGCTCGTCAATTTGATTCCAAAATGAATGACTTGCTCTCAGCTGATGGAGAAGATTTCTTCACATCATATGATGAGGTTTATGACACTTTTGATTCTATGGGATTAGTAGAGAACCTTTTGAGGGGTATCTATGCATATGGTTTTGAGAAGCCTTCTGCGATCCAACAAAGAGGAATTGTTCCATTCTGCAAGGGGCTCGATGTGATCCAACAGGCACAATCTGGAACTGGGAAAACTGCAACTTTCTGCTCTGGAATCTTGCAGCAACTTGATTATAGTCTAGTCCAATGCCAGGCATTGGTATTGGCACCCACTCGAGAACTTGCACAGCAGATTGAGAAGGTTATGCGAGCACTTGGTGATTATCTCGGTGTGAGGGTTCATGCTTGTGTGGGTGGAACGAGTGTTCGTGAGGATCAGCGCATTCTTCAAACTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGACATGTTGCGGAGACAGTCACTTCGCCCAGATTACATTAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTATCAAACAATTCCATGTTAA | 675 | 44.0 | MAGQAPEGSQFDARQFDSKMNDLLSADGEDFFTSYDEVYDTFDSMGLVENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVQCQALVLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVYQTIPC* | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1575914 | 1581004 | - | Vvi9g136 | Vvi9g136 | 791847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g136 | 224 | Pfam | DEAD/DEAH box helicase | 65 | 215 | IPR011545 | GO:0003676|GO:0005524 | |
Vvi9g136 | 224 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724 | |
Vvi9g136 | 224 | CDD | DEADc_EIF4A | 45 | 219 | - | - | |
Vvi9g136 | 224 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 224 | IPR014001 | - | |
Vvi9g136 | 224 | Gene3D | - | 12 | 221 | IPR027417 | - | |
Vvi9g136 | 224 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 6 | 220 | - | - | |
Vvi9g136 | 224 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 34 | 216 | IPR027417 | - | |
Vvi9g136 | 224 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
Vvi9g136 | 224 | SMART | ultradead3 | 59 | 224 | IPR014001 | - | |
Vvi9g136 | 224 | PANTHER | - | 6 | 220 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g136 | K03257 | - | vvi:100261822 | 436.032 |