Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g136 ATGGCAGGTCAAGCACCAGAAGGTTCACAATTCGATGCTCGTCAATTTGATTCCAAAATGAATGACTTGCTCTCAGCTGATGGAGAAGATTTCTTCACATCATATGATGAGGTTTATGACACTTTTGATTCTATGGGATTAGTAGAGAACCTTTTGAGGGGTATCTATGCATATGGTTTTGAGAAGCCTTCTGCGATCCAACAAAGAGGAATTGTTCCATTCTGCAAGGGGCTCGATGTGATCCAACAGGCACAATCTGGAACTGGGAAAACTGCAACTTTCTGCTCTGGAATCTTGCAGCAACTTGATTATAGTCTAGTCCAATGCCAGGCATTGGTATTGGCACCCACTCGAGAACTTGCACAGCAGATTGAGAAGGTTATGCGAGCACTTGGTGATTATCTCGGTGTGAGGGTTCATGCTTGTGTGGGTGGAACGAGTGTTCGTGAGGATCAGCGCATTCTTCAAACTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGACATGTTGCGGAGACAGTCACTTCGCCCAGATTACATTAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTATCAAACAATTCCATGTTAA 675 44.0 MAGQAPEGSQFDARQFDSKMNDLLSADGEDFFTSYDEVYDTFDSMGLVENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVQCQALVLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVYQTIPC* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1575914 1581004 - Vvi9g136 Vvi9g136 791847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g136 224 Pfam DEAD/DEAH box helicase 65 215 IPR011545 GO:0003676|GO:0005524
Vvi9g136 224 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Vvi9g136 224 CDD DEADc_EIF4A 45 219 - -
Vvi9g136 224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 224 IPR014001 -
Vvi9g136 224 Gene3D - 12 221 IPR027417 -
Vvi9g136 224 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 220 - -
Vvi9g136 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 216 IPR027417 -
Vvi9g136 224 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vvi9g136 224 SMART ultradead3 59 224 IPR014001 -
Vvi9g136 224 PANTHER - 6 220 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g136 K03257 - vvi:100261822 436.032