Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g142 ATGGAAGAGATGTCTCCTGCAGTTTCTGTGACACTTAGTTTAGGTAGTACTTTATGTGATAATTCGGGAATTGCAACCCATGTGGAAATCACACAGCTCAAACTGGTAACAGATACTGTGAGCTTGTTATCAAGCCCTGCAACTGTACTCTCTTCAGAGTCTGTTTGTAGTGGTGATGGAATTCGAAATGATGTTAAGAGTGAGCCCAATGGGGTAAGTGAATCCGAAGCAGAAGAAGACAGTGGTGGGCGAAGAGTGACTTTCGAGGAAGATGAGATCTTAGCTGTAGTGGACAACACCAGTAGAATTAGTCATGAGGACTTGTTGGCTTTGGTTGCTGGGTCCGAAATAAGCTTGCCAAATTCTATGGAAATTGAAAATGTTGAACATGGTCAAATTGTTGCTAAGGCGATTATATTGCGGGAATCTTCTGAGAAGGTGCCTGCTGGTGAACTCCTTGCCGTGGCAGTGAACCCGGATGCAGTGTTGTCTGGTGGGTCTGATTTGAAGGCATCTGCAGTGGTTTTTCAGTTGTCTACAGACAAGAATCTCAGCAAAGGAAGTGTGCGAAGTGTTTTCGAGCTGGATTGTATACCCCTTTGGGGTTCTGTGTCAATCCAAGGGCAAAGACCAGAAATGGAGGATGCGGTTGCCGCTGTTCCTCGGTTTATGGAAACTCCCATCAAAATGCTTATTGGCAATCGGGCAATCGATGGAATGAGCCAAAGATTCACCCACCTAACCACTCATTTTTTTGGGGTTTATGATGGCCATGGAGGCTCTCAGGTTGCTAACTATTGTCGTGATCGAATCCATTTGGCTTTGGCTGAAGAAATAGGAAGTATCAAGGACGATGTGGAGGATAACAGGCATGGGCTGTGGGAGAATGCCTTCACTAGTTGCTTTCAAAAGGTTGATGATGAGATTGGGGGGGAACCTATTGCTCCAGAAACTGTTGGGTCTACAGCTGTGGTTGCCTTAATCTGTTCATCCCATATCATCATCGCCAACTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGCAAGGAGCCCATTGCACTATCAATTGATCATAGACCAAACAGAGAAGATGAATATGCAAGGATTGAGGCATCTGGAGGCAAGGTCATACAATGGAATGGCCATCGTGTTTTCGGCGTTCTTGCAATGTCGAGATCTATTGGTGATAGGTATCTGAAACCATGGATCATCCCAGAGCCAGAAGTCATGATGGTGCCTCGGGCTAGAGAAGACGACTGTCTCATCTTAGCCAGTGACGGGTTATGGGATGTCATGACAAACGAGGAAGTATGTGAAGTAGCTCGAAGGCGGATTCTGCTGTGGCACAAAAAGAATGGAGTCGCATCCCTTGTAGAAAGGGGCAAAGGAATCGACCCTGCAGCTCAGGCAGCAGCAGAGTACCTCTCAATGCTTGCTATCCAAAAGGGAAGCAAGGACAACATATCTGTGATTGTGGTGGACTTGAAAGCTCAAAGGAAGTTCAAGAGTAAACCCTCATAA 1521 46.02 MEEMSPAVSVTLSLGSTLCDNSGIATHVEITQLKLVTDTVSLLSSPATVLSSESVCSGDGIRNDVKSEPNGVSESEAEEDSGGRRVTFEEDEILAVVDNTSRISHEDLLALVAGSEISLPNSMEIENVEHGQIVAKAIILRESSEKVPAGELLAVAVNPDAVLSGGSDLKASAVVFQLSTDKNLSKGSVRSVFELDCIPLWGSVSIQGQRPEMEDAVAAVPRFMETPIKMLIGNRAIDGMSQRFTHLTTHFFGVYDGHGGSQVANYCRDRIHLALAEEIGSIKDDVEDNRHGLWENAFTSCFQKVDDEIGGEPIAPETVGSTAVVALICSSHIIIANCGDSRAVLCRGKEPIALSIDHRPNREDEYARIEASGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMMVPRAREDDCLILASDGLWDVMTNEEVCEVARRRILLWHKKNGVASLVERGKGIDPAAQAAAEYLSMLAIQKGSKDNISVIVVDLKAQRKFKSKPS* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1638177 1641769 + Vvi9g142 Vvi9g142 791853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g142 506 ProSitePatterns PPM-type phosphatase domain signature. 251 259 IPR000222 GO:0043169
Vvi9g142 506 Gene3D - 187 505 IPR036457 -
Vvi9g142 506 ProSiteProfiles PPM-type phosphatase domain profile. 200 495 IPR001932 -
Vvi9g142 506 MobiDBLite consensus disorder prediction 58 84 - -
Vvi9g142 506 SMART PP2C_4 190 493 IPR001932 -
Vvi9g142 506 Pfam Protein phosphatase 2C 220 488 IPR001932 -
Vvi9g142 506 SUPERFAMILY PP2C-like 190 496 IPR036457 -
Vvi9g142 506 MobiDBLite consensus disorder prediction 69 84 - -
Vvi9g142 506 PANTHER PROTEIN PHOSPHATASE 2C 16 95 504 - -
Vvi9g142 506 PANTHER ALPHABET, ISOFORM E-RELATED 95 504 - -
Vvi9g142 506 CDD PP2Cc 202 495 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g142 Vvi11g141 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g142 K14497 - vvi:100241147 968.378