Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g18 ATGTTCTTGGGAGATGGCCGAAGCAACACTATCATCACTGGAAGCAAAAATGTTGTAGATGGCAGCACAACCTTCAACTCTGCAACTGTTGCTGTGGTTGGCGAAAAATTTATAGCCCGGGACATAACCTTCCAAAACACAGCAGGGCCCTCAAAGCATCAAGCCGTTGCTCTTCGAGTTGGGTCAGACTTATCAGCATTCTACAAATGCGATATGCTGGCATACCAAGACACCCTTTATGTTCACTCCAATCGCCAATTTTACATAAATTGCCTTGTAGCAGGCACTGTTGATTTCATCTTTGGCAATGCTGCAGCTGTGTTTCAAGACTGTGATATCCATGCTCGCCGCCCCAATTCAGGCCAAAAGAACATGCTTACTGCTCAAGGCAGGACTGACCCTAACCAGAACACTGGAATTGTGATTCAGAAGTGCAGGATTGGTGCCACTTCTGACCTCCAAGCTGTTATTAGCAGCTTCAAAACATACCTTGGGAGACCATGGAAGGAATACTCGAGGACTGTTGTTATGCAAACATCAATAACCAATGTGATCGACCCTGCTGGATGGCATGAATGGAGTGGGAGTTTTGCACTGAGCACATTGTATTATGGAGAGTACCAAAACACCGGGGCTGGGGCTGGAACCTCAAAGAGAGTAACATGGAAGGGCTTCAAGGTGATTACTAGTGCTAGTGAGGCTCAAGGTTTCACTCCTGGGACGTTCATTGCAGGCAGTAGTTGGTTGGGCTCCACCGGCTTTCCCTATTCTCTTGGTCTGGAACATCAGAAGGGCATCTGGACATATGGAACATTCGTGCGTACCACCACTTTGTTGGACGCGTACATGGATTCGATCAAATCCTTCAAGGGTTATGGCAAGGTGGACGAGCTGGAAGAGCGAGCATTTAAGCGCAAGACCCGCAAGCGCCTCATCATTCTCATTATCTCCTCAGTCGTGTTAGTGGCGGTCATCATCGACATCCAGGTTCACCGCAAACTGCTGAGCTTCTCCAATTCCGATCAGTTTCCCGATTGGGTGGGGGCTGGCGAGCGGAGACTGCTCCAGGAAACAAAGCCAACCCCAGATGTGACGGTGGCGAAGGACGGCACTGGAGACTACGTGACCATAAAAGAAGCAGTGGCAATGGTGCCGAAGAAGAGTGAAAAGCGATTCGTGATATACGTAAAGGAAGGCAACTACTCGGAGAACATCATTTTAGACAAGAGCAAATGGAACGTCATGATATACGGCGACGGGAAGGATAAGAGCATCGTCTCCGGCAACTTGAACTTCATTGATGGGACCCCCACCTTCGCCACAGCCACTTTCGCCGCTGTGGGGAAGGGGTTTATAGCAAAGTACATGAGGTTCGAGAACACGGCAGGTGCGGCGAAGCATCAGGCGGTGGCCTTCCGCTCAGGGTCTGACATGTCCGTCTTCTACCAGTGCTCATTCGACGCCTTCCAGGACACCCTATACGCCCACTCCAACCGTCAGTTCTACCGGGAGTGCGACATCACAGGCACCATCGACTTCATCTTCGGCAACGCGGCTGTCGTCTTTCAGGCCTGCAAAATCCAGCCCAGGCAGCCAATGTCCAACCAATTCAACACCATTACTGCTCAGGGCAAGAAGGACCCCAATCAGAACACTGGCATTTCCATCCAAAAATGCTCCATCTCCGCTCTCAATACTCTGACAGCACCCACGTACCTGGGCAGGCCATGGAAGGCCTACTCCACCACCATCGTGATGCAGTCAAACATCGGCTCATTCTTGAACCCAAAAGGCTGGACGGAATGGGTCACCGGCGTCGACCCTCCCAGCACCATCTTCTATGCTGAGTTTCAAAACACTGGCCCAGGAGCTACCCTTGATCAAAGAGTCAAATGGGCTGGATTCATGACCAACATCACAGAGGATGAGGCAGCCAAGTTCACAGTCGGAACATTCATCCAAGGCGCCAGTTGGTTGTCAGAGAGCAGCGTGACCTTCGATGCATCCTTGTGA 2013 50.87 MFLGDGRSNTIITGSKNVVDGSTTFNSATVAVVGEKFIARDITFQNTAGPSKHQAVALRVGSDLSAFYKCDMLAYQDTLYVHSNRQFYINCLVAGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMLTAQGRTDPNQNTGIVIQKCRIGATSDLQAVISSFKTYLGRPWKEYSRTVVMQTSITNVIDPAGWHEWSGSFALSTLYYGEYQNTGAGAGTSKRVTWKGFKVITSASEAQGFTPGTFIAGSSWLGSTGFPYSLGLEHQKGIWTYGTFVRTTTLLDAYMDSIKSFKGYGKVDELEERAFKRKTRKRLIILIISSVVLVAVIIDIQVHRKLLSFSNSDQFPDWVGAGERRLLQETKPTPDVTVAKDGTGDYVTIKEAVAMVPKKSEKRFVIYVKEGNYSENIILDKSKWNVMIYGDGKDKSIVSGNLNFIDGTPTFATATFAAVGKGFIAKYMRFENTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQACKIQPRQPMSNQFNTITAQGKKDPNQNTGISIQKCSISALNTLTAPTYLGRPWKAYSTTIVMQSNIGSFLNPKGWTEWVTGVDPPSTIFYAEFQNTGPGATLDQRVKWAGFMTNITEDEAAKFTVGTFIQGASWLSESSVTFDASL* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 241389 248247 + Vvi9g18 Vvi9g18 791729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g18 670 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Vvi9g18 670 ProSitePatterns Pectinesterase signature 2. 507 516 IPR033131 -
Vvi9g18 670 PANTHER PECTINESTERASE 1 259 - -
Vvi9g18 670 PANTHER PECTINESTERASE 320 666 - -
Vvi9g18 670 SUPERFAMILY Pectin lyase-like 1 259 IPR011050 -
Vvi9g18 670 Pfam Pectinesterase 1 245 IPR000070 GO:0030599|GO:0042545
Vvi9g18 670 Pfam Pectinesterase 363 655 IPR000070 GO:0030599|GO:0042545
Vvi9g18 670 Gene3D - 357 670 IPR012334 -
Vvi9g18 670 Gene3D - 1 260 IPR012334 -
Vvi9g18 670 SUPERFAMILY Pectin lyase-like 360 666 IPR011050 -
Vvi9g18 670 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 320 666 - -
Vvi9g18 670 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 1 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g18 Vvi11g11 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g18 - - vvi:100232847 696.041