Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g182 ATGTCTAATTTGACTTCAGCATCTGGTGAAGCAAGTGTTTCTTCTGGAAATAGAGCTGAAACTGCCCCCATGTATCCTCAACAACAATACTTTGCTCCACCAAATCAAGCTCAAGCTCAAGTTCAAGCTCAGCCTTCAGTGAAGAAGAAGAGAAACCTGCCAGGAAACCCAGACCCAGATGCAGAAGTGATAGCTTTGTCACCCAAAACACTCATGGCAACAAACAGATTTGTGTGTGAGATCTGCAACAAAGGGTTCCAGAGGGACCAGAATCTTCAGCTTCATAGAAGAGGGCATAATCTTCCATGGAAACTGAAGCAAAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAAGCCAGTTGTGTGCACCATGACCCATCAAGAGCTCTAGGGGACCTGACAGGAATCAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAGGTATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATAACTCACAGAGCTTTCTGTGATGCTTTGGCAGAGGAGAGTGCAAGGGCAATCACTGGGAACCCAATGAGCCTCCAGCAACAACAACAATTCAACAGCAACCATGATTTCCATGCATTTCAGATGAAGAAAGAGCAGCAAAACAACCCAAGATTTGGCTCTCCATGA 750 45.47 MSNLTSASGEASVSSGNRAETAPMYPQQQYFAPPNQAQAQVQAQPSVKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPMSLQQQQQFNSNHDFHAFQMKKEQQNNPRFGSP* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2109340 2111892 - Vvi9g182 Vvi9g182 791893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g182 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Vvi9g182 249 Gene3D Classic Zinc Finger 146 211 - -
Vvi9g182 249 Gene3D Classic Zinc Finger 56 127 - -
Vvi9g182 249 SMART c2h2final6 118 148 IPR013087 -
Vvi9g182 249 SMART c2h2final6 77 99 IPR013087 -
Vvi9g182 249 SMART c2h2final6 153 173 IPR013087 -
Vvi9g182 249 Pfam Zinc-finger double-stranded RNA-binding 77 99 IPR022755 -
Vvi9g182 249 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 240 - -
Vvi9g182 249 MobiDBLite consensus disorder prediction 1 49 - -
Vvi9g182 249 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 240 - -
Vvi9g182 249 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Vvi9g182 249 MobiDBLite consensus disorder prediction 1 61 - -
Vvi9g182 249 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g93 Vvi9g182 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15221 PF12171 zf-C2H2_jaz 6.30E-05 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g182 K25870 - vvi:109123222 478.018