Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g193 ATGAGTAAGGATCAGAAGAGAGGGAAGCAGGAGAAATCCTCGGAGGCTGCCGAGAAGGTGGTTGTTGCGGTGAAGGCGTCGAGAGAAATCCCGAAAACTGCTCTGGTATGGGCCTTAACTCATGTTGTGCAGCCTGGGGATTGCATTACTCTGCTTGTTGTCGTCCCTGCACAAAGCCCAGGTAGAAAATTATGGGGTTTCCCAAGATTTGCAGGGGACTGTGCGAGCGGTCACCGGAAATCTCATTCAGGAGCAAGTTCAGAGCAGAAATGTGAGATTACAGATTCTTGTTCACAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAACAAGATAAATGTCAAGATAAAGATTGTCTCTGGATCACCATGTGGAGCAGTTTCTGGAGAGGCCAAAAGAACAGAAGCTAATTGGGTTGTATTGGATAAGCAGCTCAAACATGAGGAAAAATGCTGCATGGAGGAGCTGCAATGCAACATTGTGGTTATGAAGCGCTCCCAACCTAAAGTTCTCCGCTTGAATTTGGTTGGATCACCTAAGATGGAATCTGAAACAGCCTTTGTGACTCCAAGCAGTATGAATGGAGACCTAAAGAAAGAGGAATCATCACATACAAAAGAAAATTTGGATCTTGATGAATCTAGTTCAGACACTGACAATGAAAATTTATCTCCATCTTCAAATAAGTTCTCAAAAATTGATCGTGATGCTAGAATTGGAATGATGAACTATAGGTCAGAACTGGACTTCAGTGGGAACGTTAGAGAAGCAATTTCATTATCCAGAAATGCGCCTCCTGGTCCACCTCCATTGTGTTCAATATGTCAACACAAGGCTCCTGTATTTGGAAAGCCCCCAAGGTGGTTCAGCTATGCCGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCTAATTTCTTGGCAGAAGGCGGGTTTGGATCTGTCCACAGAGGGGTCCTACCTGATGGCCAAGCAGTTGCTGTGAAGCAACACAAATTGGCTAGTTCTCAGGGTGATGTTGAATTTTGCTCAGAAGTGGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGGTACTGTATAGAAGACAGAAGAAGGTTGCTGGTTTATGAATATATATGCAATGGCTCACTGGATTCTCATCTATATGGACGCCATCGAGATCCACTAGAATGGTCTGCTCGACAAAAAGTTGCTGTTGGAGCTGCTCGAGGTCTGCGTTATCTTCATGAAGAATGCAGAGTGGGTTGCATTGTCCACCGTGACATGCGACCCAACAACATCCTCATCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGCCTGGCTAGGTGGCAGCCTGATGGAGACACGGGTGTGGAAACAAGAGTAATTGGAACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGCGGCCAAATCACAGAAAAGGCTGATGTATATTCTTTTGGGGTTGTCTTGGTGGAGCTTGTCACAGGACGAAAAGCTGTGGACCTTAACCGGCCCAAGGGTCAGCAATGCCTCACTGAATGGGCACGTCCTTTACTGGAAGAGTATGCCATTGATGAACTAGTAGACCCACGGCTGGGAAACTGTTATTCGGAGCAGGAGGTCTATTGCATGTTGCATGCAGCATCCTTGTGCATACGGAGGGATCCTCATGCAAGGCCTCGGATGTCACAGGTGTTACGCATTCTGGAGGGAGACATGGTTATGGACTCAAATTACATGGCAACCCCGGGTTATGATGTGGGCAGCCAGAGTGGGCGGATTTGGTCAGACCAGCATCAACATTACAGTGGTCCAATATTAAACGAGGCATATGAAGAATTCAGTGGTAAGCTGTCCCTTGAAGCGCTAAGGTCAGCCTTCTGGGAGAAGGATAAGGGCAGGAGGACTTCAAGCGAAGACAAATTGTAA 1938 46.44 MSKDQKRGKQEKSSEAAEKVVVAVKASREIPKTALVWALTHVVQPGDCITLLVVVPAQSPGRKLWGFPRFAGDCASGHRKSHSGASSEQKCEITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVSGEAKRTEANWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKMESETAFVTPSSMNGDLKKEESSHTKENLDLDESSSDTDNENLSPSSNKFSKIDRDARIGMMNYRSELDFSGNVREAISLSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQAVAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGYCIEDRRRLLVYEYICNGSLDSHLYGRHRDPLEWSARQKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNCYSEQEVYCMLHAASLCIRRDPHARPRMSQVLRILEGDMVMDSNYMATPGYDVGSQSGRIWSDQHQHYSGPILNEAYEEFSGKLSLEALRSAFWEKDKGRRTSSEDKL* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2187508 2193420 - Vvi9g193 Vvi9g193 791904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g193 645 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 15 207 - -
Vvi9g193 645 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 202 607 - -
Vvi9g193 645 MobiDBLite consensus disorder prediction 184 232 - -
Vvi9g193 645 CDD STKc_IRAK 308 574 - -
Vvi9g193 645 SUPERFAMILY Protein kinase-like (PK-like) 286 581 IPR011009 -
Vvi9g193 645 ProSitePatterns Tyrosine protein kinases specific active-site signature. 423 435 IPR008266 GO:0004672|GO:0006468
Vvi9g193 645 Gene3D Transferase(Phosphotransferase) domain 1 378 584 - -
Vvi9g193 645 MobiDBLite consensus disorder prediction 198 214 - -
Vvi9g193 645 Gene3D HUPs 3 151 IPR014729 -
Vvi9g193 645 CDD USP_Like 19 142 - -
Vvi9g193 645 Gene3D Phosphorylase Kinase; domain 1 274 377 - -
Vvi9g193 645 ProSiteProfiles Protein kinase domain profile. 302 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g193 645 Pfam Protein tyrosine and serine/threonine kinase 306 571 IPR001245 GO:0004672|GO:0006468
Vvi9g193 645 PANTHER OS01G0253100 PROTEIN 15 207 IPR045271 GO:0004714|GO:0006468
Vvi9g193 645 PANTHER OS01G0253100 PROTEIN 202 607 IPR045271 GO:0004714|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g193 Vvi11g203 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76841 PF07714 PK_Tyr_Ser-Thr 3.70E-41 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g193 - - vvi:100244602 1217.6