Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g220 ATGTGGGACAGTCTTAACTGCAGCTATGATGGTCATGAACCCCCCAGGATCATATCCTTGAACTTGTCCTCAAGTGGATTGACTGGGGAAATAGCTCCTTCTATATCAAATCTAACGTTGGTACAATATCTGGATTTATCAAACAATGGCTTAACTGGACCAGTACCTGATTTTCTTTCTCAACTTCCATTGTTGAGGGCCCAAAACTTGACAGGAAACAAGCTGACAGGATCTATTCCAGTTGAACTCATTGAAAGATCAGAGAATGGATCACTGCTATTGAGTGTGAATGAAAATCCAAATCTTTGTTGGTCGGGTTCATGCAAAAAGAAAAAGAAGTTTGTTGTTCCAATAGTGGCATCAGTTGCTGCACTATTCATTCTCTTAACTGCACTGGCTATCTTCTGGAAGCATAGAAGGGGGGGAAAACAAGTTAGTAAGGATCAGGAAATGGTTTCCGAATCCAACAGAGATGAAGGGTCTTTGGTGTCAAAAAAACAGCAATTTACATATTCTGAGGTCATCACTATCACCAACAACTTTGAGAAGGAAGTGGGGAAAGGTGGATTTGGAACAGTTTACCATGGCCATCTAGATGACACTCAAGTTGCTGTGAAGATGTTCTCTCCATCATCAATTCAAGGATATAAGCAGTTTCAGGCAGAGGCAAAACTTCTTATGAGAGTTCACCACAGAAACATTACTTCTCTTATTGGCTATTGCAAGGAAGGCAACAACATGGGGCTCATCTATGAGTACATGGCCAATGGAGACTTACAGAGGCATCCATCTGGTAATGAGAGAAATACAAATGTTCTGAGTTGGGAAGAGAGACTAAGAATAGCAGTGGAGACAGCACAAGGATTGGAGTATTTGCACAATGGTTGTAAGCCACCTATAATCCACAGAGACATAAAGTCTACCAACATCTTATTGAATGAAAAATTCCAGGCCAAACTAGCTGATTTTAGGCTGTCCAGAGCTTTTCCAAATGAAGGCAGCACTCATGTGTCAACAATAGTTGCTGGCACCCGTGGCTACCTTGATCCTGAGTACCATGCATCAAACAGGTTGACTGAGAAAAGCGATGTTTTTAGCTTTGGGGTTGTTCTTTTAGAGATCATCACAAGCCAGTCCCCAGTTCCTGGAAATCATGAGGAGACTCACATAATTCAATGGGTTAGTTCCATGCTAGCAAATGGGGATATTAAGAATATTGTTGACCCCAGGCTACAGGGAGACTTTGACATCAATTCTGCCTGGAAAGCTGTAGAAGTAGCAATGTCTTGTGTAGCTTCCACTTCAACTGAAAGGCCAGCTATGAACTATGTAGATTACAGGACAATCCCCTTCATTCTAGATGATGTTTGTGCCAAACTGAATTCATCTGCTGCTATAGGTATCACATTTGGCAATTATCATGAAGGTAAAATAACTATGAAGCAGACATTTCAAACTCAGAAGAGATTGTTAGATTTTTGTTTTAGATCACATATCTTGTATTACCAATTGGAAGTGAGAGTGCATCACCTGAATTTGGAATCAATAGCCTTCTACAGCAATCTTGGAACTTCAGAAGCTCCCCTGAAGGAGTACAAAAACTATTACACCCTGAGACCTGCAAGAGACAAAGGCAATAAATGCTTAATGAGGGCATGGTCCATGCATTGGAATCATGATGCTGAAGATAGGACTATAGGACAGCACTCACAATTTAGATTATGTGCTAAGCATGAACCATGTAGTGATGGAATTACAGCAGTTAACAGAAATAGCTGGATCCACATACTGGAACTACTCCCCTGGCTCAGTAGTACAGTTTACATGACTCTCAGTAATGCCCAAAATTCAAATGTCATACATGCTTCCTGCACTAATGGAAGACTATTGGATCAGGCAAAAATTTGCACCATTTGTCTCAAGAACCAGTTTTCCAAGCCAAGGAGGTTATCACCCTCCAATGCCAAGCTGGGATTTCCTCTATTAGGGGAGGAAAGCATTTACCACAGAGCTGCTGTGCCCCATTGCAAAAAGAATCTGAAGAAGGTGATGGACATGTTAAAAGGCTCTCTATTTGAATTACTTGGTACTTTTGCTCTTATATTTCTCGTTCATGCCCAGGATCAATCAGGCTTTATAAGCATAGATTGTGGGATATCAGAAGATTCCAGCTATACCGATCAGGTGACTGGTATATATTACACTTCAGATGCAACCTTCATTGATACTGGTATAAGTAACAGCAGAGGTAATAAATATTTGATCAGAGCACAGTTCATGTATGGAAATTACGATGCCAAAAATCAGCTACCAGAATTTGATCTGATTCTTGGAGTAAATATGTTGGAGTCAGTGCAATTGGATAATGCATCCAGTGTCATAAGCAAGGAGATCATACATGTCTTGTTATTGGATAATTCCATGTATGAAACTCAATCAGGATCACTAGTACGCTATGCAAGGTGGGATTTTGGTTCACCCTATGAATTAATAAGGTTTAAAGATGATAACTGTGATCGCTTTTGGTTCCCATACAACTCGGGTGAATGGAAAATGTTAAATACCTCGCGTACTATTGACACTGATGATGACAACAAACTTCAACTAACATCTATTGTCATGAGCACTGCCGTCAAACCACTAAACACGATGGAACCTTTGAAGTTCTCCTGGGAGTCCACTGATCCGACTTCTAAATTTTACATCTATTTGTACTTTGCTGAAGTGGAGGAACTCCAATTAAATGAGTCCAGAGAGTTTAACATCTTTCTGAATGGAAATTTATGGCATGGACCACTTACTCCTGAAAGTTTTGAAGCAACTGCAATGTACAGAATTTCATCCAGCATCAGTGAAAAGTTTGAGTTTTCAATCTATAAAACCAATAGTTCAACACTTCCCCCCATCATCAATGCTCTCGAAGTTTATCTAGTAAAACAACTCCTGCAATCACAAACAGACCAAAAAGATGTTGATGCCATCATGAATATCAAATCATTGTATGGAGTGAAGAAAAACTGGCAGGGAGATCCTTGTGCGCCTGAAAATTACTCATGGGAGGGCCTTAACTGCAGCTACAATGACTACAATCCCCCCAGGATCATATCCTTGAACTTGTCCTCAAGCAGATTGACTGGGAACATAACTCCTTATATATCTAACCTCACACTCTTACAGTCTTTGGACTTATCACAAAATGGCTTGAATGGACCAATACCTGATTTTCTATCTCAACTGCCACTCTTGAGGTCCCTAAACTTAACAGGAAACAAGCTCACAGGATCAGTTCCCGTTGAACTCATTGAAAGATATAAGAATGGATCACTGTTGTTGAGTGTGAAGAGCAATCCAGAACTTTGTTGGCCAGGCTCATGCAAAAAGAAGAACAAGTTTGTTGTTCCAGTAGTGGTATCAGTTACTGCAGCATTCATTTTCTTAACTACACTGGCTACCTTCTGGTGGATTAGAAGAGGAAGACAAGAAGTTGGGAAGGTAGAGGAGATGGATGCTGAGATGGACTCAAACAAACGCCAGTTTACATATTCTGAGGTCCTGACTATTACCAACAACCTTGAGAAGGTTGTTGGAAAAGGAGGATTTGGAACTGTTTACTATGGTCATCTAGATGGAATTCAAGTTGCTGTGAAGATGCTCTCTCAATCATCAATTCAAGGATATAAGCAATTTCAGGCTGAGGTAAATTACAACAAGTTCATCACAGAAATGTGA 3729 40.28 MWDSLNCSYDGHEPPRIISLNLSSSGLTGEIAPSISNLTLVQYLDLSNNGLTGPVPDFLSQLPLLRAQNLTGNKLTGSIPVELIERSENGSLLLSVNENPNLCWSGSCKKKKKFVVPIVASVAALFILLTALAIFWKHRRGGKQVSKDQEMVSESNRDEGSLVSKKQQFTYSEVITITNNFEKEVGKGGFGTVYHGHLDDTQVAVKMFSPSSIQGYKQFQAEAKLLMRVHHRNITSLIGYCKEGNNMGLIYEYMANGDLQRHPSGNERNTNVLSWEERLRIAVETAQGLEYLHNGCKPPIIHRDIKSTNILLNEKFQAKLADFRLSRAFPNEGSTHVSTIVAGTRGYLDPEYHASNRLTEKSDVFSFGVVLLEIITSQSPVPGNHEETHIIQWVSSMLANGDIKNIVDPRLQGDFDINSAWKAVEVAMSCVASTSTERPAMNYVDYRTIPFILDDVCAKLNSSAAIGITFGNYHEGKITMKQTFQTQKRLLDFCFRSHILYYQLEVRVHHLNLESIAFYSNLGTSEAPLKEYKNYYTLRPARDKGNKCLMRAWSMHWNHDAEDRTIGQHSQFRLCAKHEPCSDGITAVNRNSWIHILELLPWLSSTVYMTLSNAQNSNVIHASCTNGRLLDQAKICTICLKNQFSKPRRLSPSNAKLGFPLLGEESIYHRAAVPHCKKNLKKVMDMLKGSLFELLGTFALIFLVHAQDQSGFISIDCGISEDSSYTDQVTGIYYTSDATFIDTGISNSRGNKYLIRAQFMYGNYDAKNQLPEFDLILGVNMLESVQLDNASSVISKEIIHVLLLDNSMYETQSGSLVRYARWDFGSPYELIRFKDDNCDRFWFPYNSGEWKMLNTSRTIDTDDDNKLQLTSIVMSTAVKPLNTMEPLKFSWESTDPTSKFYIYLYFAEVEELQLNESREFNIFLNGNLWHGPLTPESFEATAMYRISSSISEKFEFSIYKTNSSTLPPIINALEVYLVKQLLQSQTDQKDVDAIMNIKSLYGVKKNWQGDPCAPENYSWEGLNCSYNDYNPPRIISLNLSSSRLTGNITPYISNLTLLQSLDLSQNGLNGPIPDFLSQLPLLRSLNLTGNKLTGSVPVELIERYKNGSLLLSVKSNPELCWPGSCKKKNKFVVPVVVSVTAAFIFLTTLATFWWIRRGRQEVGKVEEMDAEMDSNKRQFTYSEVLTITNNLEKVVGKGGFGTVYYGHLDGIQVAVKMLSQSSIQGYKQFQAEVNYNKFITEM* 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2462005 2473398 - Vvi9g220 Vvi9g220 791931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g220 1242 CDD STKc_IRAK 185 444 - -
Vvi9g220 1242 SUPERFAMILY L domain-like 991 1100 - -
Vvi9g220 1242 SUPERFAMILY Protein kinase-like (PK-like) 162 444 IPR011009 -
Vvi9g220 1242 Gene3D Ribonuclease Inhibitor 1 95 IPR032675 -
Vvi9g220 1242 Gene3D Ribonuclease Inhibitor 990 1109 IPR032675 -
Vvi9g220 1242 ProSitePatterns Protein kinases ATP-binding region signature. 1195 1216 IPR017441 GO:0005524
Vvi9g220 1242 SUPERFAMILY Protein kinase-like (PK-like) 1174 1235 IPR011009 -
Vvi9g220 1242 SUPERFAMILY L domain-like 14 84 - -
Vvi9g220 1242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Vvi9g220 1242 ProSiteProfiles Protein kinase domain profile. 179 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g220 1242 PANTHER OS07G0107800 PROTEIN-RELATED 698 1235 - -
Vvi9g220 1242 PANTHER OS07G0107800 PROTEIN-RELATED 1 444 - -
Vvi9g220 1242 Pfam Protein tyrosine and serine/threonine kinase 181 442 IPR001245 GO:0004672|GO:0006468
Vvi9g220 1242 ProSitePatterns Protein kinases ATP-binding region signature. 185 206 IPR017441 GO:0005524
Vvi9g220 1242 Gene3D Transferase(Phosphotransferase) domain 1 254 449 - -
Vvi9g220 1242 SMART serkin_6 179 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g220 1242 Pfam Malectin-like domain 748 802 IPR024788 -
Vvi9g220 1242 Pfam Malectin-like domain 803 977 IPR024788 -
Vvi9g220 1242 Pfam Malectin-like domain 715 747 IPR024788 -
Vvi9g220 1242 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 1 444 - -
Vvi9g220 1242 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 698 1235 - -
Vvi9g220 1242 ProSiteProfiles Protein kinase domain profile. 1189 1242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g220 1242 Gene3D Phosphorylase Kinase; domain 1 1161 1240 - -
Vvi9g220 1242 Gene3D Phosphorylase Kinase; domain 1 166 253 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76843 PF07714 PK_Tyr_Ser-Thr 5.40E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g220 - - qsu:111984977 587.415