Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g234 ATGAAATTGGATATGGAGCATCTGTGCCCGGTTTACCTTGGTCATTTTCGCAATCGTATTGAGTTGGCTGTCAAGAAGCTTTCAGCTTTAAATAGAGGATTCAGGAAATTTCAGACAGAGGCAAGCTTCTCTATAGCTGAGCTGTTGACAAGAGTTCACCATAAAAACTTGGTTTCTCCGCTTGGATACCATTTTGAAAGTTCAAGCATGACACTCATTTATGAGTATATGGGGCCGGGGAGCTTAAGAAAGTATTTATCAGGTATCCATTTCTCTAATACTCAATACAATCTCTGGAAACAAAGAATTGGAATAGCACTTGATGTAGCGCAAGGACTGGAATATTTACATAATGGTTGCAAGACACCCATAATCCAGAGAGACATTAAATCTGCAAACATCTTACTAAATGAAAAGAACGAAAAATTGCAAGCTAAAGTGGCAGATTTTGGGTTGTCTAGAAGTGTGCCTAATGAAGATCCTGCTTATTTATCAACTGTGGTCGTTGGCACATGCCATTACCTTGACCCCAAGTATTTCTTAACGGCAGGGTTGAGTGAGGAAAATGATGTCTATGGCTTTGGGATTGTTCTATTGGAGCTTATTTCAGGCCAACCTGCAGTGGCAAAGAGCAGCGTGGGCACAGTTCACCTACTCCAATGTGTTCCTCTCCTGCTTCTTGATACGGGGGAAATCACGGCTATTGTGGATCCAAGGTTAAATATTGAACGCTTTGACATCTATTCTGCCCGGAAGCTTGTAGGAACAGCAATGGCTTGTGTAAAATGTAACTCCCCGAAAAGGCCAATCATGAGTGATGTAGCAGACAAATTAAAACAGTGTATGAACTATTTAGCAAGAACAATTGGGGATGCGGAAGAGTATACTCCTTTTAGTTGTTTTCATATGAAAGGGAATTTGTCTTACATTTTTGGAATTGTAGTTGAAGCTATCAGGAACGTAAAGTCAGTGTATGGAGTGAAGAGGAACTGGCAAGGTGATCCTTGTGCTCCAAAAAAGCACTTGTGGGATGGCCTTGAGTGCAGCTACAATGGTTACAATTCCCCCAGGATCATCTCTCTGGACCTGTCTTCAAGTGGGTTGTCCGGGAAAATAGACTCTTCACTGTCCAATCTCGAATCCTTACAGTACTTAGATTTATCAAACAACAGTCTAACTGGAGAAGTGCCAGATTTTCTCAGCCAACTGCCTCTATTGAAGACCCTAAACTTATCAGGAAATGAATTCACAGGTTCAGTTCCATCACTTCTTATCCAAAGATCCAAAAATGGATCCCTCTCTTTGAGTGTCGTTATACCTGTAATTGCATCTATTGCTGTAGTTTTAGTGCTTCTGATCGCATTCCTCATCTTGTGGGGCTTAAAAAGAAGACGACAACAACGGCAAGGTATTGATATCTATTTAAGAAATGATTTTGGAATGATCATAAAAAAATGCTTGTTTAGTTATATAACAATTGTTTCATCTCTGTGCATAGCCCTTGAATCCAAAGCCAATTATGAAGAAGATGGAAGATTGGAGTCAAAGAATCTGCAATTTACATATTCTGAACTTGTAAACATAACCAACAACTTCCAAAAAGTACTTGGGAAAGGAGGATTTGGATCAGTTTATGGTGGCTACTTCAATGATGGCACTCAAGTTGCTGTGAAGATGCTATCAGAACAATCAGCTCAAGGGTTTAAGGAATTCATGCCATCAGAGAGTAGAACTATTGTATCAACTAAAGTTGCTGGCACACCCGGCTACCTCGATCCTGAGCTTGCAGGAGGGGAAATAAGAAGCATTGTAGACTCTACGCTAAATGGAGATTTCAACCCAAACTCGGCCTGGAAACTTGTAGAGACAGCAATGGCATGTGTGCCCAGAAGCTCCATACAAAGGCCAACAATGAGTCAAGTGGTTGCGGACCTGAAGGAGTGTCTGCAGATGGAAATGCACCGCAACAAAAGTGCTTCACAGTCTAGAAAATATCAAGATACAGCATCAAGTGCTAATTCCATTGATCTGTTTGCTGTTGACCTCGACGTCTCAATGCCTCATGCAAGATAG 2073 41.1 MKLDMEHLCPVYLGHFRNRIELAVKKLSALNRGFRKFQTEASFSIAELLTRVHHKNLVSPLGYHFESSSMTLIYEYMGPGSLRKYLSGIHFSNTQYNLWKQRIGIALDVAQGLEYLHNGCKTPIIQRDIKSANILLNEKNEKLQAKVADFGLSRSVPNEDPAYLSTVVVGTCHYLDPKYFLTAGLSEENDVYGFGIVLLELISGQPAVAKSSVGTVHLLQCVPLLLLDTGEITAIVDPRLNIERFDIYSARKLVGTAMACVKCNSPKRPIMSDVADKLKQCMNYLARTIGDAEEYTPFSCFHMKGNLSYIFGIVVEAIRNVKSVYGVKRNWQGDPCAPKKHLWDGLECSYNGYNSPRIISLDLSSSGLSGKIDSSLSNLESLQYLDLSNNSLTGEVPDFLSQLPLLKTLNLSGNEFTGSVPSLLIQRSKNGSLSLSVVIPVIASIAVVLVLLIAFLILWGLKRRRQQRQGIDIYLRNDFGMIIKKCLFSYITIVSSLCIALESKANYEEDGRLESKNLQFTYSELVNITNNFQKVLGKGGFGSVYGGYFNDGTQVAVKMLSEQSAQGFKEFMPSESRTIVSTKVAGTPGYLDPELAGGEIRSIVDSTLNGDFNPNSAWKLVETAMACVPRSSIQRPTMSQVVADLKECLQMEMHRNKSASQSRKYQDTASSANSIDLFAVDLDVSMPHAR* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2652218 2656658 + Vvi9g234 Vvi9g234 791945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g234 690 SMART serkin_6 5 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g234 690 ProSiteProfiles Protein kinase domain profile. 1 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g234 690 Pfam Leucine rich repeat 360 415 IPR001611 GO:0005515
Vvi9g234 690 SUPERFAMILY Protein kinase-like (PK-like) 511 568 IPR011009 -
Vvi9g234 690 SUPERFAMILY Protein kinase-like (PK-like) 11 278 IPR011009 -
Vvi9g234 690 Gene3D Transferase(Phosphotransferase) domain 1 595 674 - -
Vvi9g234 690 Gene3D Transferase(Phosphotransferase) domain 1 78 295 - -
Vvi9g234 690 SUPERFAMILY L domain-like 317 425 - -
Vvi9g234 690 Gene3D Ribonuclease Inhibitor 314 435 IPR032675 -
Vvi9g234 690 Gene3D Phosphorylase Kinase; domain 1 6 77 - -
Vvi9g234 690 Pfam Protein tyrosine and serine/threonine kinase 15 207 IPR001245 GO:0004672|GO:0006468
Vvi9g234 690 SUPERFAMILY Protein kinase-like (PK-like) 532 648 IPR011009 -
Vvi9g234 690 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE 315 572 - -
Vvi9g234 690 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE 596 662 - -
Vvi9g234 690 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE 11 284 - -
Vvi9g234 690 PANTHER OS07G0107800 PROTEIN-RELATED 11 284 - -
Vvi9g234 690 PANTHER OS07G0107800 PROTEIN-RELATED 315 572 - -
Vvi9g234 690 PANTHER OS07G0107800 PROTEIN-RELATED 596 662 - -
Vvi9g234 690 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Vvi9g234 690 Gene3D Phosphorylase Kinase; domain 1 512 583 - -
Vvi9g234 690 ProSiteProfiles Leucine-rich repeat profile. 381 403 IPR001611 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76850 PF07714 PK_Tyr_Ser-Thr 5.30E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g234 - - vvi:100241278 288.5