Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g24 ATGGCTAGGGTTCATCCTCAATCACTGCTTTCTTCTGCTCACTGCTACTTCACTTCCAAACAAGAAGTTTTTACTATATGGATGAAGTCTCTAGTACTGCATGGAAAAGGATGCACTGTGTTTGATTCAAACGGGGGAATCGTGTATCGTGTTGATAACTATGACCGCAAATGTAGCAATGAAGTTTACCTTATGGATTTCAGAGGCAAAGTTCTCTACACCATACTGAGAAAGAGATTTAAATTTTTCTGTTGCTGGGAGGGCTACTGTGCTGCTAAAGAGATTAAGCAAGGTAAGCCAGGGTTCCGGGTTAGATCGAAAACATTTGGAATTCTAAGAGGAGGTTCTCCATTTAAGGCGGTTGTGGGGTTGGATAAAAATCAACCATGTCAGATTAAGATAGAGAAGAGGACTAGTAGCAATTCAACATGCAAGATAGTAGATGAATTGGGGTTGCTTGTTGCAGAGGTAAAGAGAAAAACATCGAAGTGTGGAGTTGTGTTGGGAGATGATGTTTTGACAATGGTGGTGGAGCCTTATATTGATCACTCTCTCAGAGAGAGATTATTGATGTGGTGGAGATCGGCTTCTTTTATTCTCGACAAGGGTCAGAACGACGAAGTGCAGGACGAGAGCGAGAGCCTCCGCCTCTCCCCATCCAACACCTCCATGGCCGACACTCTCCAAAACCCTAACCCTAAGATTTCAGCCTACTACCAGACCAGAGCGGATCACCACGGCGTCGTCACCAGCGACTGGCTCGCCCAAGCTCAGGCCGCCGTTGGCCGCCACCCCGACGACCTCCCGCCCCCCAAGGTCGAAGATTCCGGCAAGCCTTTTAGCGTCATCGATGAGTTCAATAGCTGGCGGAAGCAGCCCGATTTGGCCGAGGCGGTGGCCGCGATTCGCGCTTTGGCGTCGGTGATTCGGTTCAGCCAGGCTACCACCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAATCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGCGATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAGCTAAATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGTACCATTTTGGTGCATGGTTTCTCTAGAGTTGTCTTGGAAGTTCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCTTGATGTTCCTGTGAAGCTCTTAATAGACTCAGCAGTGGCATATACTATGGATGAGGTTGACATGGTATTTGTTGGGGCTGATGGAGTAGTTGAAAGTGGAGGTATAATTAACATGATGGGGACATATCAAATCGCATTGGTGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGCCCCATTGATTTTGGGGTTCCCATCCCTTCAAAGGTTGAGGTTGAAACATCTGCACGGGATTATACACCTCCTCAGTATCTCACATTGCTCTTTACAGATCTGGGTGTTCTCACCCCATCTGTGGTTAGTGATGAACTCATTCAGCTATACTTATAG 1740 46.44 MARVHPQSLLSSAHCYFTSKQEVFTIWMKSLVLHGKGCTVFDSNGGIVYRVDNYDRKCSNEVYLMDFRGKVLYTILRKRFKFFCCWEGYCAAKEIKQGKPGFRVRSKTFGILRGGSPFKAVVGLDKNQPCQIKIEKRTSSNSTCKIVDELGLLVAEVKRKTSKCGVVLGDDVLTMVVEPYIDHSLRERLLMWWRSASFILDKGQNDEVQDESESLRLSPSNTSMADTLQNPNPKISAYYQTRADHHGVVTSDWLAQAQAAVGRHPDDLPPPKVEDSGKPFSVIDEFNSWRKQPDLAEAVAAIRALASVIRFSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYENFNSAKSRLIERAERFGEISYKARRIIAMLGQDFIFDGCTILVHGFSRVVLEVLKTAAQNKKLFRVFCTEGRPDRTGLRLSNEMAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 296819 302290 + Vvi9g24 Vvi9g24 791735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g24 579 Gene3D - 383 579 IPR042529 -
Vvi9g24 579 SUPERFAMILY Tubby C-terminal domain-like 16 185 IPR025659 -
Vvi9g24 579 SUPERFAMILY NagB/RpiA/CoA transferase-like 295 578 IPR037171 -
Vvi9g24 579 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 227 579 - -
Vvi9g24 579 Coils Coil 317 337 - -
Vvi9g24 579 MobiDBLite consensus disorder prediction 210 231 - -
Vvi9g24 579 Pfam LURP-one-related 15 185 IPR007612 -
Vvi9g24 579 Gene3D - 13 191 IPR038595 -
Vvi9g24 579 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 227 579 - -
Vvi9g24 579 Pfam Initiation factor 2 subunit family 293 567 IPR000649 GO:0044237
Vvi9g24 579 MobiDBLite consensus disorder prediction 214 231 - -
Vvi9g24 579 Gene3D - 279 380 IPR042528 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g24 K03239 - rcu:8276560 887.1