Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g255 ATGGCGGCAATGCTGGTGTCTCCGCCACCGCCACCTCAGCTTCTACATCCGCCGCCTCCGTCGCCGGGATTTGAGCTGCACAAGGCGGCGCTTTACGTGGGGGATCTGGATCCGGAGGTGTCGGAGGTTGAGCTGGTGGACGTCTTCTCCGGGATGGGTCCTCTGGTCTCCGTTCGCCTCTGCAGAGACTCACTCTCCGGAAAGTCCCTTTGCTATGCTTATGTCAACTTCTTCCATCCCTCCGATGCTTCTAAGGCTTTGGCATGTCTTAACCACACTAAACTGATGGGGAAACCCATGAGGATAATGTGGTCTCACAGAGACCCTCTTCCAAGAAAGACTGGTCTTGCCAATCTTTTTGTCAAGAACCTCGATCCTTCAATCAACAGTGCTTCTCTGCAGGACATTTTCTGCAAGTTTGGCAATATACTCTCTTGCAAGGTGGCGGAAGAAAATGGGAAGAGTAAATGTTTTGGGTTTGTTCAGTTTGATTCGGATGACTCGGCCACTGCTGCTCTTAATGCTCTAAATGATACAATGCTTGACGGGAAAAAGTTATTTGTGTCCAAATTTGTCAAGAAATGTGAGAGGAAGGAGGCTTCTGAGGAAACAAAATTTACAAATGTGTATGTGAAAAATCTGGGTGAAGATTTGACAGAGGATATCATTCGAGACAAGTTCTCTGAATTTGGGAAAGTTGGCACTGTTGTTATCATGAAGGATGGCAATGGGAAATCCAGAGGGTTTGGTTTTGTGAACTTTGAGTCGCCAGATGAGGCTAAGAAGGCTGTGGAGGCCCTCAATGGTGCAATGCTAGGATCAAAGAAGTTGTTTGTTGGAAGGGCTCAGAAAAAAGCTGAAAGGCAGGAGCTTCTAAAACATGAGAAGGAGATGGTCAACTGCAATATTGGGAAGGAGAAGGCGTCAAACTTGTATGTGAAGAATCTTGATGCATCTGTTGATGACGACAAATTGCAAGAACATTTCAGCTCCTGTGGACAAATAACTTCTGCCAAAGTGATGCGACATGATAGTGGGCTCAGTAAAGGATTTGGTTTTGTATGCTTCTCAACTTCTGAAGAAGCACAGAAGGCTTTGACTACACTTAATGGAACCCTACTTCATGGAAGGTCTTTGTACATTGCTATGGCACAGCGTAAAGAAGATCGTCAGAGGGTACTGCGAGATTACTACTCACAATACCTCTTGCAGTATTATGGTCCTCATTTCCTTTCCTCTGGATCCAGTTCACCTGATTACTCTTTTGTTCCCTTCCCTCACCCAAATCCTACCCCACAGATTAATTCACCTCAGCCAATCATATGTCAACAGTTTGGTAGGAACCTTGGTGTGATGCGCCCTTTTGCCCCACAGAATTACCAGCAAAATTTTTCCACATTTGTAAGGAAACCCTCTGGTTTTATTTTGTGA 1431 45.56 MAAMLVSPPPPPQLLHPPPPSPGFELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGPHFLSSGSSSPDYSFVPFPHPNPTPQINSPQPIICQQFGRNLGVMRPFAPQNYQQNFSTFVRKPSGFIL* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2903492 2906826 - Vvi9g255 Vvi9g255 791966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g255 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Vvi9g255 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Vvi9g255 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Vvi9g255 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
Vvi9g255 476 CDD RRM1_I_PABPs 30 109 - -
Vvi9g255 476 Gene3D - 296 396 IPR012677 -
Vvi9g255 476 Gene3D - 197 295 IPR012677 -
Vvi9g255 476 Gene3D - 111 196 IPR012677 -
Vvi9g255 476 MobiDBLite consensus disorder prediction 1 20 - -
Vvi9g255 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723
Vvi9g255 476 CDD RRM3_I_PABPs 206 285 - -
Vvi9g255 476 SMART rrm2_1 30 103 IPR003954 GO:0003676
Vvi9g255 476 SMART rrm2_1 208 280 IPR003954 GO:0003676
Vvi9g255 476 SMART rrm2_1 118 189 IPR003954 GO:0003676
Vvi9g255 476 SMART rrm2_1 310 382 IPR003954 GO:0003676
Vvi9g255 476 Gene3D - 15 110 IPR012677 -
Vvi9g255 476 SMART rrm1_1 208 280 IPR000504 GO:0003723
Vvi9g255 476 SMART rrm1_1 118 189 IPR000504 GO:0003723
Vvi9g255 476 SMART rrm1_1 30 103 IPR000504 GO:0003723
Vvi9g255 476 SMART rrm1_1 310 382 IPR000504 GO:0003723
Vvi9g255 476 SUPERFAMILY RNA-binding domain, RBD 17 114 IPR035979 GO:0003676
Vvi9g255 476 PANTHER POLYADENYLATE-BINDING PROTEIN 6 24 468 - -
Vvi9g255 476 SUPERFAMILY RNA-binding domain, RBD 305 408 IPR035979 GO:0003676
Vvi9g255 476 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 416 IPR006515 GO:0003723
Vvi9g255 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Vvi9g255 476 CDD RRM4_I_PABPs 309 386 - -
Vvi9g255 476 PANTHER RNA BINDING PROTEIN 24 468 - -
Vvi9g255 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Vvi9g255 476 SUPERFAMILY RNA-binding domain, RBD 118 288 IPR035979 GO:0003676
Vvi9g255 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g247 Vvi9g255 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g255 K13126 - vvi:100256670 933.324