Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g255 | ATGGCGGCAATGCTGGTGTCTCCGCCACCGCCACCTCAGCTTCTACATCCGCCGCCTCCGTCGCCGGGATTTGAGCTGCACAAGGCGGCGCTTTACGTGGGGGATCTGGATCCGGAGGTGTCGGAGGTTGAGCTGGTGGACGTCTTCTCCGGGATGGGTCCTCTGGTCTCCGTTCGCCTCTGCAGAGACTCACTCTCCGGAAAGTCCCTTTGCTATGCTTATGTCAACTTCTTCCATCCCTCCGATGCTTCTAAGGCTTTGGCATGTCTTAACCACACTAAACTGATGGGGAAACCCATGAGGATAATGTGGTCTCACAGAGACCCTCTTCCAAGAAAGACTGGTCTTGCCAATCTTTTTGTCAAGAACCTCGATCCTTCAATCAACAGTGCTTCTCTGCAGGACATTTTCTGCAAGTTTGGCAATATACTCTCTTGCAAGGTGGCGGAAGAAAATGGGAAGAGTAAATGTTTTGGGTTTGTTCAGTTTGATTCGGATGACTCGGCCACTGCTGCTCTTAATGCTCTAAATGATACAATGCTTGACGGGAAAAAGTTATTTGTGTCCAAATTTGTCAAGAAATGTGAGAGGAAGGAGGCTTCTGAGGAAACAAAATTTACAAATGTGTATGTGAAAAATCTGGGTGAAGATTTGACAGAGGATATCATTCGAGACAAGTTCTCTGAATTTGGGAAAGTTGGCACTGTTGTTATCATGAAGGATGGCAATGGGAAATCCAGAGGGTTTGGTTTTGTGAACTTTGAGTCGCCAGATGAGGCTAAGAAGGCTGTGGAGGCCCTCAATGGTGCAATGCTAGGATCAAAGAAGTTGTTTGTTGGAAGGGCTCAGAAAAAAGCTGAAAGGCAGGAGCTTCTAAAACATGAGAAGGAGATGGTCAACTGCAATATTGGGAAGGAGAAGGCGTCAAACTTGTATGTGAAGAATCTTGATGCATCTGTTGATGACGACAAATTGCAAGAACATTTCAGCTCCTGTGGACAAATAACTTCTGCCAAAGTGATGCGACATGATAGTGGGCTCAGTAAAGGATTTGGTTTTGTATGCTTCTCAACTTCTGAAGAAGCACAGAAGGCTTTGACTACACTTAATGGAACCCTACTTCATGGAAGGTCTTTGTACATTGCTATGGCACAGCGTAAAGAAGATCGTCAGAGGGTACTGCGAGATTACTACTCACAATACCTCTTGCAGTATTATGGTCCTCATTTCCTTTCCTCTGGATCCAGTTCACCTGATTACTCTTTTGTTCCCTTCCCTCACCCAAATCCTACCCCACAGATTAATTCACCTCAGCCAATCATATGTCAACAGTTTGGTAGGAACCTTGGTGTGATGCGCCCTTTTGCCCCACAGAATTACCAGCAAAATTTTTCCACATTTGTAAGGAAACCCTCTGGTTTTATTTTGTGA | 1431 | 45.56 | MAAMLVSPPPPPQLLHPPPPSPGFELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGPHFLSSGSSSPDYSFVPFPHPNPTPQINSPQPIICQQFGRNLGVMRPFAPQNYQQNFSTFVRKPSGFIL* | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2903492 | 2906826 | - | Vvi9g255 | Vvi9g255 | 791966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g255 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 311 | 379 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 186 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 277 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 100 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Vvi9g255 | 476 | Gene3D | - | 296 | 396 | IPR012677 | - | |
Vvi9g255 | 476 | Gene3D | - | 197 | 295 | IPR012677 | - | |
Vvi9g255 | 476 | Gene3D | - | 111 | 196 | IPR012677 | - | |
Vvi9g255 | 476 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vvi9g255 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 193 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | CDD | RRM3_I_PABPs | 206 | 285 | - | - | |
Vvi9g255 | 476 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Vvi9g255 | 476 | SMART | rrm2_1 | 208 | 280 | IPR003954 | GO:0003676 | |
Vvi9g255 | 476 | SMART | rrm2_1 | 118 | 189 | IPR003954 | GO:0003676 | |
Vvi9g255 | 476 | SMART | rrm2_1 | 310 | 382 | IPR003954 | GO:0003676 | |
Vvi9g255 | 476 | Gene3D | - | 15 | 110 | IPR012677 | - | |
Vvi9g255 | 476 | SMART | rrm1_1 | 208 | 280 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | SMART | rrm1_1 | 118 | 189 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | SMART | rrm1_1 | 310 | 382 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 17 | 114 | IPR035979 | GO:0003676 | |
Vvi9g255 | 476 | PANTHER | POLYADENYLATE-BINDING PROTEIN 6 | 24 | 468 | - | - | |
Vvi9g255 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 305 | 408 | IPR035979 | GO:0003676 | |
Vvi9g255 | 476 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 29 | 416 | IPR006515 | GO:0003723 | |
Vvi9g255 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 284 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | CDD | RRM4_I_PABPs | 309 | 386 | - | - | |
Vvi9g255 | 476 | PANTHER | RNA BINDING PROTEIN | 24 | 468 | - | - | |
Vvi9g255 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Vvi9g255 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 118 | 288 | IPR035979 | GO:0003676 | |
Vvi9g255 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 309 | 386 | IPR000504 | GO:0003723 |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g255 | K13126 | - | vvi:100256670 | 933.324 |