Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g26 ATGTTGCATACTCAAGGAATTTCAAATCACACTTGTGGTCTCCTTGCAGTCACATGTGGGAAAACTTCTGAATGTAAACAGGAGCATGAAACTTCGAATGATCGACCAAGATACCCTTTTCCTGACTTTGTTTCTTCAGGGCGATTGGAGGTTCAAACGCTGACCAGTCCGAGTCCTGATGAGTTTCGTAGAGTTTTTGAATCAGTTCAGCCAAATTTTGTGTACTTTCAAGGAGAACAACTTCAGAATGATGAAGTTGGGTCTCTAGTATGGGGAGGTGTTGAGTTGTCCAGTGCAGAAGATATATGTGGGCTCTTTGGTTCCAAATTGCCAACCACTGTTTATCTTGAGATCCCAAATGGAGAAAAATTGGCAGAGGCACTTCACTCTAAGGGAATCCCATATGTGATATATTGGAAGAATGCATTTTCTTGTTATGCTGCTTGCCATTTTCGTAATGCATTATTTTCAGTGGTACAGAGCTCATCTACTCATACATGGGATGCTTTCCAACTTGCATATGCATCCTTTAGACTTTACTGTGTTCGCAATAACCATGTCCTTCCAGCCAACAGCCACAAAGTTAGTGGTAAGTTGGGTCCACGCCTTCTTGGGGACCCTGCAACAATTGATGTTCCTCCTCCTGAGGTAGATGCTGGGGAAGATGAAGAAGGCTCTCTGGGCACTCTTCCTGCTATAAAGATATATGATGATGATGTGGGCATTAGGTTTCTTGTTTGTGGAGAGCCATGCATGTTGGATTCATGCTTATTCGAATCTTTAGAAGATGGTCTCAATGCCCTCTTGAGCATTGAAATACGCGGGAGCAAACTTCATAACAGAGTTAGTGCCCCTCCACCACCTCTTCAGGCAGGGACGTTTTCTCGTGGTGTTGTGACCATGCGATGTGATTTATCCACCTGTAGTTCAGCTCATATCTCGCTTCTGGTCTCAGGTAGTGCACAAACTTGCTTTGATGATCAGCTCTTGGAGAATAATATAAAGAAGGAAGTCACTGAACAGAGTCAACTAGTTCATGCACTGCCATACTCTGAGGGAAACAAGCCACCTTTGTCTGAACCTCGGAGGTCTGCTTCAATTGCTTGTGGGGCAGCAGTATTTGAAGTTTGTGCCAAAGTTCCTGCTTGGGCTTCACAGGTTCTGAGGCAGCTCGCTCCAGATGTTTCCTATCGTAGTTTAGTTGCACTTGGCATTGCTAGCATTCAAGGATTGGCTGTTGCTTCTTTTGAGAAAGATGATGCCAATCGCCTTCTTTTCTTCTGTACAAGGCAGGGTAAATATATCCATCCTAACAATTTTACTCCCAGCAGGCTTCCAAGCTGGTTGAAACCACCTCCTCCTAGTAGAAAGAGAGTTGAACCATCCCAGGACACAATGAATGGTGTGACCATGCCTCTACTACCTGCTGGGCAGAGACTGAAAGTTGCTGCAATGAGGCCTATTCCTCATATTCGTCACCATAAAATGTTGCCCTTTTCTGGAATTTCTGAGGCAGATGGGCATGATGGAGGCCAAGTTAAGGCTAACTTGTCAGTGCCCCCCCCTACGAAGCATAGTATTGTAGGATCAACTTCTGCAATGCATCGAAAATCATTTTCAAGCTCATATCAAGCGAAGCAGATAATTTCCTTGAATCCCCTGCCTTTGAAGAAACATGGTTGTGGCAGAAGCCCTATACGGGTTTGCTCTGAGGAGGAGTTTCTAAAGGATGTGATGCAGTTTTTAAACCTTCGTGGACACACTCGTCTCATTCCTCAAGGAGGACTTGCCGAGTTCCCTGATGCTATTCTCAATGCAAAGCGTCTTGACCTCTATAACTTGTATAGGGAGGTGGTTTCAAGAGGTGGCTTTCATGTTGGCAATGGCATCAACTGGAAAGGACAGGTGTTCTCCAAGATGCGCAATCACACGGTCACTAACCGAATGACTGGTGTCGGGAATACACTGAAGAGACATTATGAAACTTACCTTTTAGAATATGAATTAGCACATGACGATGTAGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGCATTTGTGGTGAGTGGGCCCACTTTGGCTGTGATAGAAGGCAGGGCCTTGGTGCCTTCAAGGATTATGCAAAAACAGATGGGCTAGAATACATTTGTCCACAATGCAGCGTTACAAATTTTAAGAAGAAAGCGAATAAAGCCCCAAATGGTTTCTCCTGA 2241 44.76 MLHTQGISNHTCGLLAVTCGKTSECKQEHETSNDRPRYPFPDFVSSGRLEVQTLTSPSPDEFRRVFESVQPNFVYFQGEQLQNDEVGSLVWGGVELSSAEDICGLFGSKLPTTVYLEIPNGEKLAEALHSKGIPYVIYWKNAFSCYAACHFRNALFSVVQSSSTHTWDAFQLAYASFRLYCVRNNHVLPANSHKVSGKLGPRLLGDPATIDVPPPEVDAGEDEEGSLGTLPAIKIYDDDVGIRFLVCGEPCMLDSCLFESLEDGLNALLSIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFDDQLLENNIKKEVTEQSQLVHALPYSEGNKPPLSEPRRSASIACGAAVFEVCAKVPAWASQVLRQLAPDVSYRSLVALGIASIQGLAVASFEKDDANRLLFFCTRQGKYIHPNNFTPSRLPSWLKPPPPSRKRVEPSQDTMNGVTMPLLPAGQRLKVAAMRPIPHIRHHKMLPFSGISEADGHDGGQVKANLSVPPPTKHSIVGSTSAMHRKSFSSSYQAKQIISLNPLPLKKHGCGRSPIRVCSEEEFLKDVMQFLNLRGHTRLIPQGGLAEFPDAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPQCSVTNFKKKANKAPNGFS* 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 330863 339616 + Vvi9g26 Vvi9g26 791737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g26 746 MobiDBLite consensus disorder prediction 445 468 - -
Vvi9g26 746 SMART ARID_2 565 668 - -
Vvi9g26 746 SUPERFAMILY ARID-like 569 683 IPR036431 GO:0003677
Vvi9g26 746 CDD PHD_ARID4_like 678 729 - -
Vvi9g26 746 CDD ARID 570 668 - -
Vvi9g26 746 Gene3D - 565 673 IPR036431 GO:0003677
Vvi9g26 746 ProSiteProfiles ARID domain profile. 568 672 IPR001606 GO:0003677
Vvi9g26 746 SUPERFAMILY FYVE/PHD zinc finger 664 732 IPR011011 -
Vvi9g26 746 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 745 - -
Vvi9g26 746 Pfam ARID/BRIGHT DNA binding domain 571 668 IPR001606 GO:0003677
Vvi9g26 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 730 IPR013083 -
Vvi9g26 746 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 745 IPR042293 -
Vvi9g26 746 SMART bright_3 569 673 IPR001606 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g26 Vvi11g16 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15224 PF01388 ARID 1.70E-14 CL0123 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g26 - - vvi:100251584 1514.98