Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g268 ATGGGAAGAGCTACAAGGTGGTTGAGAGGCTTGTTGGGGATGAAGAAAGACAAGGAACAGGTGGAGAATTCCACCGCTGGTGACCGGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCAGGGAGGGATACTTCTGGTGTGGGTCAGAACCCAGTCAACTTTCCGGCCAACATTCCGGTTGATTCCGCTTGGTTGAGATCTTACATTTCTGAGACAGAGAAAGAGCAGAACAAGCACGCAATTGCTGTGGCTGCAGCCACCGCAGCCGCTGCGGATGCTGCGGTGGCCGCAGCACAGGCTGCAGTGGCTGTGGTGAGGCTCACAAGCCATGGCAGAGGAACCCTCTTTGGTGGAGGCAGAGACAGGTGGGCTGCAACCAAGATTCAGACTGTTTTTAGGGGATATTTGGCCCGAAAGGCGCATAGAGCTTTGAAAGGATTGGTGAAGTTGCAGGCTCTTGTTAGGGGTTTTCTTGTTCGAAAGCGGGCTGCCGCAACCCTTCATAGTATGCAAGCTCTTATAAGGGCTCAGGCTGCTGTTCGATCCCAAAGAACTCTCCGTGCCCGCAACAAAGAAAACAGATTTCCACCAGAAATGAGGCCTAGAAGATCCATTGAAAGGTTTGAGGAAACCAGAAGTGAATTCCACAGTAAGAGGATGTCAACATCTTTTGAGACTTCAGTTAATGCATTTGATGAAAGCCCAAAGATCGTCGAAATCGATACATTCAAGCCCAAGTCAAGATCCCGCAGAATGATGAATACTTCAACCTCAGATTCAGGCGAAGACCCGCCATACCTAACACTCTCATCACCTCTTCCATACTTCGAATGGTGCTTCACTGGCGACGAATGTAGGTTCTCCACTGCCCAAAGCACTCCTCGGCTTGCAAACACTAGCCGAGCAGTGGCCCCAGTTACACCAGCCAAGAGCGTATGTGGGGACAGCTTCTTCCGGCCTTACTCCAACTTCCCCAACTATATGGCCAACACTCAATCATTCAAGGCCAAACTGAGGTCTCACAGTGCCCCAAAGCAAAGACCTGAGCCTGGCCCCAAAAGGCGGTTTTCCCTCAATGAAATAATGGCATCAAGGACTAGCCTAAGCGGGGTTCGAATGCAGAGATCATGTTCCCAATCAAAAGACATGGACGGTTTTGATAGGGGTTTCTCATCATCAATGCATAGTAAACCTTCTTCAATTCTCAAAATCTCAGAATCCGTTGGGCTTAATGAGAACAATCCAAACCGTAGTTTTCAGAACCCAAAGAAATCAACTACGAAGAACTTCATGTCACCAACGATTTCTGCAGCTTCCAAGGCTACTCTTCCAAGAAAGAAAATCTTGGCAGAGAGGAATGAAGCTTCTGGATCAATTTTATCAGATGCCCATTTCTCAAAAACCCCACAAGACGCTAAATCACCTGCTGATGTGGGTATCAATGGCTCCGATGGCCCTTTGTGTCGTACCACTCCGTTGTCATATCGGGCTTCTGAATCCGAAGGCGATGATCAGAATTCTGTGCCCGATTCGTCCTCGAGGCCTTATGACCCCTTAACGAATTACCTCTCCCCGAGGCCAAAGTTTCTCAGGTACAATCCCAACAGGCGACGAGAAATTTTCCTTCTCAAGGAAAATGAAATTGAAGACGGAAATGGTCGATTGAGTATCGGCAGAAGTGTTTCTTTTGAATCTCAGAATGCCAGTGATGAGGACGGTGCTCGTGATACTTCTTCTCAAGGAGGCTCTGTACAGCCAGAAGATGAGGAAATTGTTGAAGATGAGGAAGACATTGAGGAGGAAGAGGAGCAGAGAGGTTGGAGTTTGAAAGGGGTATTGAATACTCTGTTTGTATTTGTTCTTTTGGTCCTCTCCACATCATATATATCTTCAATGAATTCTCCCTCTCCCACACCTTCCCCTGCCATGGAAGCTATAGAGGGAATCAAAGATGGCTACTTGAAAATTCAGAGCCATATATTTGGAGCTGCCTCTGTGAAAGGTCTTGAAGATGGACTCTCACAAGCTATAGAGGGTGTTCAAAATGGGTATTTGAAGATTCAGAGCCATATGTTTGGAGCTACCTCTGTGAAGAATTCTGAAAGCGGAAGTGAATTCATGGAGCAACAAGAAGATAGGAAAATGGGTTTGATTGAAGCAAATCAGGGAGCTGTTGAAGGAGAGGTGGCTGGAGATGAAAATGGGGGAGTAGCAGAAGAAACTGATGAACTGGGTCAAGTGGTAGAGTTGCAGCAAGGGGAAGAAAATGAAGATCTTTGTGGCCGGGAAATGGGGAAAACACTGGACGTTTCTGATCGGATGGCTGCAAATTTGGAGTTTCAAGAGAAAACTGCAGAGAAGTTGGAAGCTTTTCAAGATGATCCGATACAGACTCCTGAACCAGTTGTTCCAGGTATTGCAGAAAAAGATGTGATGAATACTGATTCCATTTCTAAAGAGGAACAAGTAGAAGATGATTCAGATGTGGGGGGAGCTGGTAATGAAGAAATGGTTGCAGATGAAATTGAGGGAGTAGAAGACCTTACTAACAAGGAAAATACAAACGTTGGGGTTGCCAATCTTGAACCAGAGGTGAATTTGAAGGAGGGGGTTACTGAACCTGTGGAAACTGATTCAATTCCCAAAGTTGTCATTTGGGCTTCTATATTTGCCATCATTGTGGCACCTTTGGTGTTGGGATTTCATCTCAAGCGGGAAAAAACTCTGAAAAAGGATTCACCCATGACTGTGAATCAGTGTTCTGAGTCTCTGGTAGCAGAGAAAAGCTCAGTAGTAGTGGTACCACCCAATGGGGGTGAGGACCACATTGAGAAAGTTGAGTCCTATGCCGACCCTTCAGTGGAGGAAGCTTCCCAAGAGGTCTCTCACATTGAGAAAGTTGAGTCCTATGCAGACCCTTCAGTGGAGGAAGCTTCCCAAGAGTTCTCTCAAAGCCGAGCGCCAAAAGTGGAGCTACTTGGAGAATATGTGGTTGGGGAGGTCTGTAGTACTCCTAAGATATACAGCATGAAAAGTAGGATGATGATGGAAGGTGAAGAAAGCAACCATTATTCAGTTTCTCAAGAGAAAGGGGGGACTCATTCGATTCCTATTCGCACACAAGCGACTCTCTCAGCTCTTTCCACCATGGATTCCCCTTCATATGGTAGCTTCACTGCTGAGAAATCAATCAGGAAAAAAGAGGACGGCAGAGATGGAGAAGTGAAGAAGATAGTGACAACCCCAGTGAGGCGATCGAGCCGAATCCGCACCCGTGCAATCATGTCTCCATGA 3294 46.72 MGRATRWLRGLLGMKKDKEQVENSTAGDRKEKKRWSFAKPGRDTSGVGQNPVNFPANIPVDSAWLRSYISETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFGGGRDRWAATKIQTVFRGYLARKAHRALKGLVKLQALVRGFLVRKRAAATLHSMQALIRAQAAVRSQRTLRARNKENRFPPEMRPRRSIERFEETRSEFHSKRMSTSFETSVNAFDESPKIVEIDTFKPKSRSRRMMNTSTSDSGEDPPYLTLSSPLPYFEWCFTGDECRFSTAQSTPRLANTSRAVAPVTPAKSVCGDSFFRPYSNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKRRFSLNEIMASRTSLSGVRMQRSCSQSKDMDGFDRGFSSSMHSKPSSILKISESVGLNENNPNRSFQNPKKSTTKNFMSPTISAASKATLPRKKILAERNEASGSILSDAHFSKTPQDAKSPADVGINGSDGPLCRTTPLSYRASESEGDDQNSVPDSSSRPYDPLTNYLSPRPKFLRYNPNRRREIFLLKENEIEDGNGRLSIGRSVSFESQNASDEDGARDTSSQGGSVQPEDEEIVEDEEDIEEEEEQRGWSLKGVLNTLFVFVLLVLSTSYISSMNSPSPTPSPAMEAIEGIKDGYLKIQSHIFGAASVKGLEDGLSQAIEGVQNGYLKIQSHMFGATSVKNSESGSEFMEQQEDRKMGLIEANQGAVEGEVAGDENGGVAEETDELGQVVELQQGEENEDLCGREMGKTLDVSDRMAANLEFQEKTAEKLEAFQDDPIQTPEPVVPGIAEKDVMNTDSISKEEQVEDDSDVGGAGNEEMVADEIEGVEDLTNKENTNVGVANLEPEVNLKEGVTEPVETDSIPKVVIWASIFAIIVAPLVLGFHLKREKTLKKDSPMTVNQCSESLVAEKSSVVVVPPNGGEDHIEKVESYADPSVEEASQEVSHIEKVESYADPSVEEASQEFSQSRAPKVELLGEYVVGEVCSTPKIYSMKSRMMMEGEESNHYSVSQEKGGTHSIPIRTQATLSALSTMDSPSYGSFTAEKSIRKKEDGRDGEVKKIVTTPVRRSSRIRTRAIMSP* 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3030077 3040592 - Vvi9g268 Vvi9g268 791979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g268 1097 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Vvi9g268 1097 PANTHER - 384 1097 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 409 430 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 493 519 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 558 585 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 1047 1076 - -
Vvi9g268 1097 Pfam Protein of unknown function (DUF4005) 301 380 IPR025064 -
Vvi9g268 1097 SMART iq_5 120 142 IPR000048 GO:0005515
Vvi9g268 1097 SMART iq_5 143 164 IPR000048 GO:0005515
Vvi9g268 1097 MobiDBLite consensus disorder prediction 460 530 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 587 602 - -
Vvi9g268 1097 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Vvi9g268 1097 MobiDBLite consensus disorder prediction 1061 1076 - -
Vvi9g268 1097 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
Vvi9g268 1097 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Vvi9g268 1097 MobiDBLite consensus disorder prediction 16 39 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 553 603 - -
Vvi9g268 1097 MobiDBLite consensus disorder prediction 16 51 - -
Vvi9g268 1097 PANTHER TRANSMEMBRANE PROTEIN 384 1097 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g268 - - - vvi:104880231 1352.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi9g268 Vvi11g260 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014310 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 22