Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g276 ATGAGAGATGGGGACAGCGTTGAATCTCTGGCGAGTAGGTTTGGGGTCAGTATGGGTAGTATCGAGGCAGTGAATGGGATTGATAATCCTGATAATGTTACTGTGGGTGCCCTTTATTATATACCGTTGAATTCAGTTCCTGGTGAGCCTTATCCTTTGGAGAATGCCGTTCCTCCTGCTCCTGTCCCTGCAACATCCAATAGTAACTTTTCAGTAGTTCAGGCGAATCATAAGGATCATGTTCCATATGGATGGATCATAGGGGGTTTGGGAGTTGGTCTTGCTCTGATAGCTGTACTTCTAGTTATATGTGTTTGTTTGAAATCATCAAGCTGTTTTGCTAAAGGCCGAGGAAGTCTTGCAAAAGATTCTGATGGGAAGAATCCCCATAAGTTTCAGATTCTTCGGACAAGAAGTTATTGTTGTGGTTCAGGAAGATATAGCTGCTGCAAATCTGCAGATGTGAAGCAAACTAATGGAGAATCTAGCAACCTCCAGATGAATATTCCTAAAGCTATAGGGACTGATGTATTTGACATGGAGAAGCCTGTGGTTTTCACATATGAAGAAATTCTGTCTTCAACTGATGGTTTCTCTGATTCAAATCTTCTGGGGCATGGAACATATGGTTCTGTGTATTATGGTGTTCTTCATGATCAGGAAGTTGCAATAAAAAAAATGACTGCTACAAAAACTAGAGAATTCATGTCAGAGATGAAAGTTCTGTGCAAGGTTCACCATACTAATTTGGTAGAATTGATTGGTTATGCGGCTAGTGATGATGAGCTCTTTCTTATTTATGAATATGCCCAAAAAGGTTCACTTAAAAGCCATTTACATGATCCTCAGAACAAAGGCCATACATCGCTTTCTTGGATCATGAGGGTTCAGATTGCACTTGATGCTGCTAGAGGGATCGAATACATCCATGAGCACACTAAAACTCACTATGTCCATCGAGATATTAAGACAAGCAATATCTTACTTGATGGTGCCTTCAGGGCAAAGATTTCAGATTTTGGGTTGGCAAAACTTGTTGGAAAGACTGGTGAAGGAGAAGCTTCAGCTACAAGAGTTGTTGGAACCTTTGGTTACCTGGCTCCAGAATACTTGAGTGATGGCCTGGCCACAACAAAAAGTGATGTATATGCCTTTGGCATTGTCCTTTTTGAGATAATTTCGGGGAAGGAGGCCGTTACACGAACTGAAGGCATGGTGATGAAAAATCCTGAAAGACGTTCACTGGCATCCATTATGTTAGCAGCTCTTCGGAACTCACCCAATTCCATGAGTATGTCAAGCATGAAAGATTGCATTGATCCTAATTTGATGGATTTGTATCCCCATGACTGTTTATACAAGATGGCTATGTTGGCGAAGCAATGTGTAGATCATGATCCCATTTTGCGGCCAGACATGAAGCAAGTTGTGATTTCGCTGTCACAGATCCTCTTATCCTCTGTTGAATGGGAGGCAACTCTTGCTGGGAACAGCCAAGTATTTAGTGGCCTTGTCCAAGGAAGATGA 1527 41.78 MRDGDSVESLASRFGVSMGSIEAVNGIDNPDNVTVGALYYIPLNSVPGEPYPLENAVPPAPVPATSNSNFSVVQANHKDHVPYGWIIGGLGVGLALIAVLLVICVCLKSSSCFAKGRGSLAKDSDGKNPHKFQILRTRSYCCGSGRYSCCKSADVKQTNGESSNLQMNIPKAIGTDVFDMEKPVVFTYEEILSSTDGFSDSNLLGHGTYGSVYYGVLHDQEVAIKKMTATKTREFMSEMKVLCKVHHTNLVELIGYAASDDELFLIYEYAQKGSLKSHLHDPQNKGHTSLSWIMRVQIALDAARGIEYIHEHTKTHYVHRDIKTSNILLDGAFRAKISDFGLAKLVGKTGEGEASATRVVGTFGYLAPEYLSDGLATTKSDVYAFGIVLFEIISGKEAVTRTEGMVMKNPERRSLASIMLAALRNSPNSMSMSSMKDCIDPNLMDLYPHDCLYKMAMLAKQCVDHDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3105731 3116145 + Vvi9g276 Vvi9g276 791987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g276 508 SUPERFAMILY LysM domain 2 42 IPR036779 -
Vvi9g276 508 CDD LysM 2 41 IPR018392 -
Vvi9g276 508 SUPERFAMILY Protein kinase-like (PK-like) 180 480 IPR011009 -
Vvi9g276 508 ProSiteProfiles Protein kinase domain profile. 198 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g276 508 ProSiteProfiles LysM domain profile. 1 41 IPR018392 -
Vvi9g276 508 SMART serkin_6 198 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g276 508 Pfam LysM domain 4 36 IPR018392 -
Vvi9g276 508 Pfam Protein tyrosine and serine/threonine kinase 202 478 IPR001245 GO:0004672|GO:0006468
Vvi9g276 508 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524
Vvi9g276 508 Gene3D Phosphorylase Kinase; domain 1 171 269 - -
Vvi9g276 508 Gene3D Transferase(Phosphotransferase) domain 1 271 495 - -
Vvi9g276 508 Gene3D LysM domain 1 48 IPR036779 -
Vvi9g276 508 PANTHER BNAA06G02020D PROTEIN 3 508 - -
Vvi9g276 508 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 3 508 IPR044812 GO:0019199|GO:0045087
Vvi9g276 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76861 PF07714 PK_Tyr_Ser-Thr 1.50E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g276 - - vvi:100256626 962.6