Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g3 ATGTGGCTCTTGCGGTCCCAGATTCATTCACCCCTATACCGCAGCAGCTGCCACAGCCACAGCCTCTGCGACAGCGGCAGCTACAGCAGCCGTCTCTTGGTCTTGCTCCTGCTACTGCTCTCTTGTTTTGTCTCTTCTCACCAGGCCTGCCACCACCTGGATCGGGCCTCTCTGTTATCCTTCTCCCGGGACATTTCTTCCCCTCCGTCCGCTCCTCTCAACTGGTCTTCCTTTGACTGCTGCCTCTGGGAAGGGATTACTTGTTACGAGGGCCGGGTCACCCATCTACGCCTGCCTTTAAGGGGCCTCAGCGGGGGCGTCTCTCCCTCTCTTGCTAATCTCACCCTTCTCTCCCACCTCAATCTCTCCCGTAATTCGTTCTCTGGTTCTGTTCCCCTAGAATTATTTTCGTCCTTGGAGATTCTTGATGTGAGCTTCAACCGTCTCTCAGGAGAATTACCACTGTCTCTGCTCATGGATTTCTCCTACAACAAATTCAGCGGCCGGGTTCCCCTGGGGCTTGGGGACTGTTCCAAACTGGAGGTTCTCCGAGCAGGCTTTAACTCTCTCTCAGGATTGATCCCCGAAGATATTTACAGCGCAGCAGCTTTGCGGGAAATTTCATTGCCATTGATTGGCAATCTTCCTAAGGATATGGGGAAGCTCTTCTACTTGAAGCGGCTGCTCCTTCACATCAACAAACTGACTGGTCCTCTGCCTGCATCTCTGATGAATTGCACCAAGCTAACAACACTGAATTTGAGGGTCAACTTGTTTGAAGGAGATATCTCCCGATTGCCAGATGATGATAGTATTTTAGATTCAAACGGGTTCCAAAGGCTCCAGGTTCTGGGTCTTGGGGGTTGCCGATTCACTGGTCAGGTGCCTACCTGGCTAGCTAAGCTTAGCAAGCTAGAGGTCCTGGACCTAAACAACAGCCTCAGTGGCAATATCCCTACTGAGATCGGTCAGTTGAAGTTTATTCATATTCTGGATCTCAGCTATAACAATTTCTCTGGCAGCATTCCAGACCAGATATCTAACCTCACTAACTTGGAAAAATTGGACCTCTCGGGAAACCATCTCTCTGGTGAAATCCCAGGGTCGTTGAGAAGCCTCCATTTCTTATCTTCCTTCAATGTTGCAAACAACAGTCTTGAAGGAGCAATACCATCAGGAGGTCAGTTTGATACTTTTCCTAACTCTAGCTTTGAAGGTAATCCAGGGTTGTGCGGTCCACCTCTGCAGCGGTCATGTTCCAATCAACCAGGAACCACCCATTCCTCTACACTTGGTAAAAGTCTAAACAAGAAACTCATTGTTGGACTCATAGTAGGGATTTGTTTTGTCACTGGGTTAATTCTTGCCTTGCTGACATTATGGATATGCAAGAGGAGAATCCTTCCAAGAGGGGAATCTGAGAAGAGTAATCTGGACACAATTTCCTGCACCTCCAATACAGATTTTCATTCTGAGGTTGACAAGGATACCAGCATGGTCATAGTGTTCCCAAGCAATACTAATGGAATTAAGGATCTCACAATATCTGAGATCTTTAAGGCCACGGACAATTTCAATCAAGAAAACATCATTGGATGCGGGGGCTTTGGTTTGGTTTATAAAGCTATTTTAGAAAATGGGACCAAGCTTGCAATTAAGAAACTTTCAGGAGATCTGGGCTTGATAGAAAGGGAATTCAAAGCAGAGGTTGAAGCTCTGTCCACAGCCCAACACAAGAACCTAGTGTCCCTCCAAGGTTACTGTGTGCATGACGGCATTCGGCTACTGATATATTCCTACATGGAGAATGGAAGTCTGGATTACTGGTTACATGAGAAGACTGATGGTTCACCTCAACTTGATTGGCGGTCTCGACTGAAAATAGCACAGGGAGCAAGCTGTGGGCTGGCTTACATGCACCAAATCTGCGAGCCACACATTGTGCATCGTGACATCAAGTCGAGCAACATCCTTCTCAATGACAAGTTTGAAGCACATGTAGCAGATTTTGGATTGTCCAGATTGATTCTCCCTTATCACACTCATGTTACAACAGAGCTAGTAGGTACTCTGGGTTACATACCTCCAGAGTACGGGCAAGCATGGGTGGCTACTTTGAGAGGAGATGTGTACAGTTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAAGAGGCCTGTGGAGGTATTCAAGCCAAAAATGTCAAGAGAGTTGGTTGGGTGGGTGCAGCAAATGAGGTCTGAGGGAAAACAAGACCAAGTCTTTGATCCTCTTCTCAGAGGCAAGGGCTTTGAAGAAGAGATGCTGCAGGTGCTTGATGTGGCCTGCATGTGCGTCAGCCAGAATCCTTTCAAGAGACCCACAATCAAGGAAGTTGTTAATTGGCTCGAAAATGTAGGGAACAACCCACAGGCACCCAAGTAA 2424 47.61 MWLLRSQIHSPLYRSSCHSHSLCDSGSYSSRLLVLLLLLLSCFVSSHQACHHLDRASLLSFSRDISSPPSAPLNWSSFDCCLWEGITCYEGRVTHLRLPLRGLSGGVSPSLANLTLLSHLNLSRNSFSGSVPLELFSSLEILDVSFNRLSGELPLSLLMDFSYNKFSGRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMNCTKLTTLNLRVNLFEGDISRLPDDDSILDSNGFQRLQVLGLGGCRFTGQVPTWLAKLSKLEVLDLNNSLSGNIPTEIGQLKFIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRSLHFLSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSNQPGTTHSSTLGKSLNKKLIVGLIVGICFVTGLILALLTLWICKRRILPRGESEKSNLDTISCTSNTDFHSEVDKDTSMVIVFPSNTNGIKDLTISEIFKATDNFNQENIIGCGGFGLVYKAILENGTKLAIKKLSGDLGLIEREFKAEVEALSTAQHKNLVSLQGYCVHDGIRLLIYSYMENGSLDYWLHEKTDGSPQLDWRSRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLNDKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPVEVFKPKMSRELVGWVQQMRSEGKQDQVFDPLLRGKGFEEEMLQVLDVACMCVSQNPFKRPTIKEVVNWLENVGNNPQAPK* 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 56558 59795 + Vvi9g3 Vvi9g3 791714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g3 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vvi9g3 807 Gene3D Phosphorylase Kinase; domain 1 485 600 - -
Vvi9g3 807 SUPERFAMILY Protein kinase-like (PK-like) 507 797 IPR011009 -
Vvi9g3 807 PANTHER OS02G0155400 PROTEIN 311 797 - -
Vvi9g3 807 PANTHER OS02G0155400 PROTEIN 153 210 - -
Vvi9g3 807 PANTHER OS02G0155400 PROTEIN 31 144 - -
Vvi9g3 807 PANTHER OS02G0155400 PROTEIN 273 319 - -
Vvi9g3 807 PANTHER OS02G0155400 PROTEIN 211 265 - -
Vvi9g3 807 ProSitePatterns Protein kinases ATP-binding region signature. 531 554 IPR017441 GO:0005524
Vvi9g3 807 ProSiteProfiles Leucine-rich repeat profile. 351 373 IPR001611 GO:0005515
Vvi9g3 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 211 265 - -
Vvi9g3 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 311 797 - -
Vvi9g3 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 273 319 - -
Vvi9g3 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 31 144 - -
Vvi9g3 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 153 210 - -
Vvi9g3 807 Pfam Protein kinase domain 526 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g3 807 Gene3D Ribonuclease Inhibitor 53 157 IPR032675 -
Vvi9g3 807 Gene3D Ribonuclease Inhibitor 158 205 IPR032675 -
Vvi9g3 807 Gene3D Ribonuclease Inhibitor 316 416 IPR032675 -
Vvi9g3 807 ProSiteProfiles Protein kinase domain profile. 525 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g3 807 Gene3D Ribonuclease Inhibitor 206 315 IPR032675 -
Vvi9g3 807 SMART serkin_6 525 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g3 807 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Vvi9g3 807 PRINTS Leucine-rich repeat signature 139 152 - -
Vvi9g3 807 PRINTS Leucine-rich repeat signature 349 362 - -
Vvi9g3 807 Pfam Leucine Rich Repeat 351 373 IPR001611 GO:0005515
Vvi9g3 807 SUPERFAMILY L domain-like 73 421 - -
Vvi9g3 807 Pfam Leucine rich repeat N-terminal domain 54 88 IPR013210 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76863 PF00069 Pkinase 4.40E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g3 - - vvi:100256619 1038.1