Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g302 ATGTCCTGCAAGGATGGTAAAGGCATAATGGATAATGGCAAGTATGTGAGGTATACACCTGAGCAGGTTGAAGCCCTGGAGAGGCTCTATCATGAGTGCCCGAAACCCAGTTCTATTCGGCGCCAACAGCTGATTCGGGAATGTCCGATTCTGTCCAATATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAGAATGGCTACTTCCGCCAACATACCCAGAACACAACGCTTGCCACAAAAGACACAAGTTGTGAGTCGGTGGTGACGAGCGGTCAACACCACTTGACCCCTCAGCATCCGCCCAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAGCCTACAAGGGTTGCAGAGATCCTCAAGGATCGGCCATCCTGGTTTCGCGATTGCCGAGCTGTGGATGTGCTGAATGTGTTGCCCACTGCAAATGGTGGAACTATTGAGCTGCTTTACATGCAGCTCTATGCGCCTACTACGTTGGCGCCTGCTCGTGACTTCTGGTTGTTACGTTATACTTCTGTTATGGAGGATGGAAGTCTTGTGGTCTGTGAAAGATCACTTAAAAATACTCAGAATGGTCCAAGCATGCCACCAGTGCAGCATTTTGTGAGAGCAGAAATGCTGCCAAGTGGCTACTTGATAAGACCTTGTGAAGGGGGTGGTTCAATCATACATATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCGGCTTTGCGCCAGCTGAGACAAATAGCTCAGGAGGTTTCTCAGTCTAATGTCACTGGTTGGGGTAGACGACCTGCAGCACTGCGAGCGCTTAGCCAGAGGCTGAGCAGAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCTGAGAAACTAACAGGCTTAAATCTTTCCTTTGCTAATGGATTTCCTGCAGTCAGCAATGCTGTGTTATGCGCTAAAGCATCAATGCTTTTGCAGAATGTGCCTCCAGCAATACTTCTTAGGTTTCTGCGGGAGCACAGATCAGAATGGGCAGACAACAATATTGATGCTTACTCAGCTGCAGCTGTAAAAGTTGGTCCCTGTAGTTTGCCAGGGTCTCGAGTTGGAAGTTTTGGGAGCCAAGTCATACTTCCACTGGCTCACACTATTGAGCATGAAGAGTTCTTGGAGGTCATTAAGCTGGAAGGTGTCGGCCATTGTCCTGAAGATGCAATGATGCCTAGAGACATGTTTCTCTTGCAACTATGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGGAAGCCTCCAGTCCAAATCGCACCCTAGACCTTGCATCTGCTCTTGAGATTGGGCCAGCTGGGAATAGATCATCAAATGATTATTCTGTTAATGGTGGCAATACTAGATCTGTTATGACAATTGCATTTGAATTTGCATTTGAAAGCCACCTACAAGAAAATGTAGCATCCATGGCTCGGCAGTATGTCCGCAGCATTATATCATCTGTTCAGAGGGTGGCATTAGCTCTCTCTCCTTCGCATTTAAGTTCCCATGCTGGTCTTCGACCACCACTGGGCACTCCTGAAGCGCACACACTTGCTCGTTGGATCAGTCACAGCTATAGGTGCTACCTGGGTGTGGAGCTACTCAAATCCAGTGGTGAAGGGAGTGAGACCATCCTAAAAACACTGTGGCATCTCTCAGATGCTATCATGTGCTGCTCTCTGAAGGCATTACCTGTATTCACCTTCGCAAACCAGGCTGGTCTTGATATGCTTGAGACAACCTTGGTTGCCCTGCAAGACATTACTTTGGAGAAGATATTCGATGATCATGGACGCAAGACTCTCTGCTCAGAGTTCCCTCAGATAATGCAACAGGGTTTTGCTTGCCTTCAAGGTGGTATCTGTTTGTCAAGCATGGGCCGTCCTGTCTCATATGAAAGAGCTGTGGCATGGAAGGTGCTGAATGAGGAAGAGAACGCCCATTGTGTCTGTTTTATGTTTATGAACTGGTCTTTTGTCTGA 2508 47.81 MSCKDGKGIMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVMEDGSLVVCERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQIAQEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMMGNDGIDDVTILVNSSPEKLTGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPCSLPGSRVGSFGSQVILPLAHTIEHEEFLEVIKLEGVGHCPEDAMMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRSSNDYSVNGGNTRSVMTIAFEFAFESHLQENVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRPPLGTPEAHTLARWISHSYRCYLGVELLKSSGEGSETILKTLWHLSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCVCFMFMNWSFV* 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3414694 3425101 - Vvi9g302 Vvi9g302 792013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g302 835 Pfam START domain 158 366 IPR002913 GO:0008289
Vvi9g302 835 CDD homeodomain 14 74 IPR001356 GO:0003677
Vvi9g302 835 ProSiteProfiles 'Homeobox' domain profile. 9 73 IPR001356 GO:0003677
Vvi9g302 835 CDD bZIP 66 105 - -
Vvi9g302 835 Gene3D - 192 374 IPR023393 -
Vvi9g302 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 835 IPR044830 GO:0003700
Vvi9g302 835 SUPERFAMILY Bet v1-like 157 369 - -
Vvi9g302 835 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 835 - -
Vvi9g302 835 Coils Coil 69 110 - -
Vvi9g302 835 SMART HOX_1 11 77 IPR001356 GO:0003677
Vvi9g302 835 CDD START_ArGLABRA2_like 152 368 - -
Vvi9g302 835 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
Vvi9g302 835 Gene3D - 7 80 - -
Vvi9g302 835 ProSiteProfiles START domain profile. 148 363 IPR002913 GO:0008289
Vvi9g302 835 Pfam MEKHLA domain 692 834 IPR013978 -
Vvi9g302 835 Pfam Homeodomain 14 72 IPR001356 GO:0003677
Vvi9g302 835 SMART START_1 157 367 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g277 Vvi9g302 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15227 PF01852 START 1.90E-54 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g302 K09338 - vvi:100260057 1675.6