Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g303 | ATGACCGACGGGTTCTTCGACACTGTTACCGGAAATTCTACGGATTCTTCCACTGTCACTGTTGTTGACAGTTGTAATTCCTCCTTATCTGGCAACGAGCCTCATTTCTCGGGAGACGTTGGCTGTCGGAATTTCACCGACGCTCAATTCTCCGGCGAGCTTTGCGTTCCGTGCGATGAATTGGCTGAGCTTGAATGGCTCTCGAACTTCGTGGAAGAATCATTCTCAAGCGAAGACCTGCACAAAATCCAAGTGTTATCCGGAATCAAAGCTCCGCTCCACACTACCGAATCTCCTGAACCGCAATTCCAACCCGAAACAGCCCGAAGCGAACCGATATTACAACCTCCAATGAACGTCCCCGGCAAAGCCAGAAGCAAGCGGCCACGCTCCGTCCCCTGTGACTGGTCCACGCGCCTCCTCGTGCTTTCCCCCGCCACCTCTTCATCCGAGTCTGACGCCTTCAAGAAACCGCCCAAAACGACGTCGTCGAAGAAGAAAGAGAATTCCGACTCCGCCGGTGACGGCCGGAAGTGCCTGCATTGCGCGGCCGAGAAGACCCCGCAGTGGCGAACCGGGCCTATGGGTCCCAAAACGCTGTGCAATGCATGTGGTGTCCGATTCAAATCGGGTCGGTTGGTACCCGAATACCGACCCGCCTCGAGCCCGACGTTTGTGTCCGCAAAACACTCGAACTCCCATCGGAAGGTGCTTGAACTCAGACGTCAAAAGGATCTTCAGAGGTCTCATCACCATCAATTTCTTGGTCAAACCTCCATTTTCAGCGCAACTAACGGTGACGATTACTTGATTCATCACCACGCTGGGCCTGATTTCAGGCATATGATCTAA | 852 | 53.64 | MTDGFFDTVTGNSTDSSTVTVVDSCNSSLSGNEPHFSGDVGCRNFTDAQFSGELCVPCDELAELEWLSNFVEESFSSEDLHKIQVLSGIKAPLHTTESPEPQFQPETARSEPILQPPMNVPGKARSKRPRSVPCDWSTRLLVLSPATSSSESDAFKKPPKTTSSKKKENSDSAGDGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPASSPTFVSAKHSNSHRKVLELRRQKDLQRSHHHQFLGQTSIFSATNGDDYLIHHHAGPDFRHMI* | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3439046 | 3440507 | + | Vvi9g303 | Vvi9g303 | 792014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g303 | 283 | ProSitePatterns | GATA-type zinc finger domain. | 179 | 204 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g303 | 283 | MobiDBLite | consensus disorder prediction | 93 | 132 | - | - | |
Vvi9g303 | 283 | CDD | ZnF_GATA | 178 | 225 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g303 | 283 | PIRSF | Txn_fac_GATA_plant | 2 | 265 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Vvi9g303 | 283 | ProSiteProfiles | GATA-type zinc finger domain profile. | 173 | 209 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g303 | 283 | MobiDBLite | consensus disorder prediction | 145 | 177 | - | - | |
Vvi9g303 | 283 | SMART | GATA_3 | 173 | 223 | IPR000679 | GO:0006355|GO:0043565 | |
Vvi9g303 | 283 | PANTHER | GATA TRANSCRIPTION FACTOR | 9 | 283 | - | - | |
Vvi9g303 | 283 | PANTHER | GATA TRANSCRIPTION FACTOR | 9 | 283 | - | - | |
Vvi9g303 | 283 | Gene3D | - | 173 | 224 | IPR013088 | GO:0006355|GO:0008270 | |
Vvi9g303 | 283 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 175 | 237 | - | - | |
Vvi9g303 | 283 | MobiDBLite | consensus disorder prediction | 158 | 177 | - | - | |
Vvi9g303 | 283 | Pfam | GATA zinc finger | 179 | 212 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15228 | PF00320 | GATA | 1.50E-14 | CL0167 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g303 | - | - | vvi:100254963 | 555.829 |