Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g303 ATGACCGACGGGTTCTTCGACACTGTTACCGGAAATTCTACGGATTCTTCCACTGTCACTGTTGTTGACAGTTGTAATTCCTCCTTATCTGGCAACGAGCCTCATTTCTCGGGAGACGTTGGCTGTCGGAATTTCACCGACGCTCAATTCTCCGGCGAGCTTTGCGTTCCGTGCGATGAATTGGCTGAGCTTGAATGGCTCTCGAACTTCGTGGAAGAATCATTCTCAAGCGAAGACCTGCACAAAATCCAAGTGTTATCCGGAATCAAAGCTCCGCTCCACACTACCGAATCTCCTGAACCGCAATTCCAACCCGAAACAGCCCGAAGCGAACCGATATTACAACCTCCAATGAACGTCCCCGGCAAAGCCAGAAGCAAGCGGCCACGCTCCGTCCCCTGTGACTGGTCCACGCGCCTCCTCGTGCTTTCCCCCGCCACCTCTTCATCCGAGTCTGACGCCTTCAAGAAACCGCCCAAAACGACGTCGTCGAAGAAGAAAGAGAATTCCGACTCCGCCGGTGACGGCCGGAAGTGCCTGCATTGCGCGGCCGAGAAGACCCCGCAGTGGCGAACCGGGCCTATGGGTCCCAAAACGCTGTGCAATGCATGTGGTGTCCGATTCAAATCGGGTCGGTTGGTACCCGAATACCGACCCGCCTCGAGCCCGACGTTTGTGTCCGCAAAACACTCGAACTCCCATCGGAAGGTGCTTGAACTCAGACGTCAAAAGGATCTTCAGAGGTCTCATCACCATCAATTTCTTGGTCAAACCTCCATTTTCAGCGCAACTAACGGTGACGATTACTTGATTCATCACCACGCTGGGCCTGATTTCAGGCATATGATCTAA 852 53.64 MTDGFFDTVTGNSTDSSTVTVVDSCNSSLSGNEPHFSGDVGCRNFTDAQFSGELCVPCDELAELEWLSNFVEESFSSEDLHKIQVLSGIKAPLHTTESPEPQFQPETARSEPILQPPMNVPGKARSKRPRSVPCDWSTRLLVLSPATSSSESDAFKKPPKTTSSKKKENSDSAGDGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPASSPTFVSAKHSNSHRKVLELRRQKDLQRSHHHQFLGQTSIFSATNGDDYLIHHHAGPDFRHMI* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3439046 3440507 + Vvi9g303 Vvi9g303 792014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g303 283 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 MobiDBLite consensus disorder prediction 93 132 - -
Vvi9g303 283 CDD ZnF_GATA 178 225 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 PIRSF Txn_fac_GATA_plant 2 265 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi9g303 283 ProSiteProfiles GATA-type zinc finger domain profile. 173 209 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 MobiDBLite consensus disorder prediction 145 177 - -
Vvi9g303 283 SMART GATA_3 173 223 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 PANTHER GATA TRANSCRIPTION FACTOR 9 283 - -
Vvi9g303 283 PANTHER GATA TRANSCRIPTION FACTOR 9 283 - -
Vvi9g303 283 Gene3D - 173 224 IPR013088 GO:0006355|GO:0008270
Vvi9g303 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 237 - -
Vvi9g303 283 MobiDBLite consensus disorder prediction 158 177 - -
Vvi9g303 283 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g279 Vvi9g303 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15228 PF00320 GATA 1.50E-14 CL0167 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g303 - - vvi:100254963 555.829