Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g303 ATGACCGACGGGTTCTTCGACACTGTTACCGGAAATTCTACGGATTCTTCCACTGTCACTGTTGTTGACAGTTGTAATTCCTCCTTATCTGGCAACGAGCCTCATTTCTCGGGAGACGTTGGCTGTCGGAATTTCACCGACGCTCAATTCTCCGGCGAGCTTTGCGTTCCGTGCGATGAATTGGCTGAGCTTGAATGGCTCTCGAACTTCGTGGAAGAATCATTCTCAAGCGAAGACCTGCACAAAATCCAAGTGTTATCCGGAATCAAAGCTCCGCTCCACACTACCGAATCTCCTGAACCGCAATTCCAACCCGAAACAGCCCGAAGCGAACCGATATTACAACCTCCAATGAACGTCCCCGGCAAAGCCAGAAGCAAGCGGCCACGCTCCGTCCCCTGTGACTGGTCCACGCGCCTCCTCGTGCTTTCCCCCGCCACCTCTTCATCCGAGTCTGACGCCTTCAAGAAACCGCCCAAAACGACGTCGTCGAAGAAGAAAGAGAATTCCGACTCCGCCGGTGACGGCCGGAAGTGCCTGCATTGCGCGGCCGAGAAGACCCCGCAGTGGCGAACCGGGCCTATGGGTCCCAAAACGCTGTGCAATGCATGTGGTGTCCGATTCAAATCGGGTCGGTTGGTACCCGAATACCGACCCGCCTCGAGCCCGACGTTTGTGTCCGCAAAACACTCGAACTCCCATCGGAAGGTGCTTGAACTCAGACGTCAAAAGGATCTTCAGAGGTCTCATCACCATCAATTTCTTGGTCAAACCTCCATTTTCAGCGCAACTAACGGTGACGATTACTTGATTCATCACCACGCTGGGCCTGATTTCAGGCATATGATCTAA 852 53.64 MTDGFFDTVTGNSTDSSTVTVVDSCNSSLSGNEPHFSGDVGCRNFTDAQFSGELCVPCDELAELEWLSNFVEESFSSEDLHKIQVLSGIKAPLHTTESPEPQFQPETARSEPILQPPMNVPGKARSKRPRSVPCDWSTRLLVLSPATSSSESDAFKKPPKTTSSKKKENSDSAGDGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPASSPTFVSAKHSNSHRKVLELRRQKDLQRSHHHQFLGQTSIFSATNGDDYLIHHHAGPDFRHMI* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3439046 3440507 + Vvi9g303 Vvi9g303 792014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g303 283 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 MobiDBLite consensus disorder prediction 93 132 - -
Vvi9g303 283 CDD ZnF_GATA 178 225 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 PIRSF Txn_fac_GATA_plant 2 265 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi9g303 283 ProSiteProfiles GATA-type zinc finger domain profile. 173 209 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 MobiDBLite consensus disorder prediction 145 177 - -
Vvi9g303 283 SMART GATA_3 173 223 IPR000679 GO:0006355|GO:0043565
Vvi9g303 283 PANTHER GATA TRANSCRIPTION FACTOR 9 283 - -
Vvi9g303 283 PANTHER GATA TRANSCRIPTION FACTOR 9 283 - -
Vvi9g303 283 Gene3D - 173 224 IPR013088 GO:0006355|GO:0008270
Vvi9g303 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 237 - -
Vvi9g303 283 MobiDBLite consensus disorder prediction 158 177 - -
Vvi9g303 283 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g303 - - - vvi:100254963 555.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g279 Vvi9g303 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g303 Blo05g00081 Blo06g00706 . Bda10g00830 Bpe06g00746 Bpe10g00664 . . Cmo08g00689 Cmo17g00746 Cma01g00100 Cma14g01295 Car01g00085 Car14g01147 Sed06g2170 Cpe12g00660 Cpe17g00539 Bhi01g03395 Tan04g2676 Cmetu04g3117 Lac11g0763 Hepe02g1433 . . Cla07g01259 Cam07g1241 Cec07g1441 Cco07g1399 Clacu07g1325 Cmu07g1301 Cre07g1683 Cone20ag1264 Cone17ag0146 Cone16ag0712 Cone2ag0319 Lsi02g02999 Csa07g02450 Chy04g00936 Cme01g02907 . . . . . . . Bma15g00355 . Cmo01g00103 Cmo14g01329 Cma08g00726 Cma17g00778 Car08g00614 Car17g00719 Cpe02g01690 Cpe03g01098 Bhi09g00450 . . . . . . Cla09g00007 Cam09g0008 Cec09g0008 Cco09g0007 Clacu09g0009 . Cre09g0006 Lsi07g00519 . . Cme04g01124
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g279 ECH 61 163 C2C2-Gata Transcription Factor Family AT5G25830 73.1 5.6e-39 158.7
Vvi15g383 . 1 226 C2C2-Gata Transcription Factor Family AT2G45050 56.0 5.5e-61 231.5
Vvi15g383 . 1 223 C2C2-Gata Transcription Factor Family AT3G60530 60.4 2.5e-68 255.8
Vvi9g303 ECH 45 284 C2C2-Gata Transcription Factor Family AT4G32890 50.8 5.4e-60 228.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005894 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15228 PF00320 GATA 1.50E-14 CL0167 Vvi TF