Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g326 ATGGCTTACAACAAGTTGACATCAGACGCTGCTCTTGACCCGGCGGGGCTGGTGGCGGTTGCTGTTGCCCATGGTTTCGCTCTCTTTGTTGCAGTCGCTATTAGCGCCAACATCTCCGGTGGCCATGTTAACCCTGCGGTGACCTTCGGGCTGGTTGTTGGTGGTCAGATCACCATTCTCACTGGCATCTTGTACTGGATTGCCCAGCTTGTTGGCTCCATTCTTGCATGTTTCCTACTCAAACTTGTCACAGGAGGCTTGACGACTCCCGTCCATAGTCTTGGAGCTGGGGTTGGAGTCATTGATGCTATTGTCTTCGAGATCGTGATCACTTTCGCTCTGGTCTACACCGTCTATGCAACGGCGGTTGACCCGAAGAAGGGCTCACTGGGCATCATTGCACCCATTGCCATAGGTCTTGTTGTAGGTGCAAACATCCTGGCTGCAGGCCCATTCTCCGGATCTGTCTATGCAATTATGTACATGGGCTCTGATCATCAACCACTAGCGTCCAGCGAATTCTAA 525 52.38 MAYNKLTSDAALDPAGLVAVAVAHGFALFVAVAISANISGGHVNPAVTFGLVVGGQITILTGILYWIAQLVGSILACFLLKLVTGGLTTPVHSLGAGVGVIDAIVFEIVITFALVYTVYATAVDPKKGSLGIIAPIAIGLVVGANILAAGPFSGSVYAIMYMGSDHQPLASSEF* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3713109 3714187 - Vvi9g326 Vvi9g326 792037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g326 174 ProSitePatterns MIP family signature. 42 50 IPR022357 -
Vvi9g326 174 PRINTS Major intrinsic protein family signature 24 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g326 174 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g326 174 PRINTS Major intrinsic protein family signature 106 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g326 174 PRINTS Major intrinsic protein family signature 139 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g326 174 Gene3D Glycerol uptake facilitator protein. 1 158 IPR023271 -
Vvi9g326 174 Pfam Major intrinsic protein 2 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g326 174 PANTHER AQUAPORIN-8 1 156 IPR034294 -
Vvi9g326 174 PANTHER MIP PROTEIN 1 156 - -
Vvi9g326 174 SUPERFAMILY Aquaporin-like 10 155 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g326 K09873 - vvi:100233028 316.62