Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g340 ATGTCGTCACCTGCTCCGGCTTCATCGGCGACCACCAACAGGACCAGTCCACCACCTCCGCCTCCGACTACAAACGGAACCATTCAAGCTCCTGTCGCTTCTCCTCCGCCTCCGGGGGGTCCACGTCCGCCGAGTGGATTGACGACGGCGACACTGATTACGCTGATTGTTGGAATTGTGATCGGTGGACTGTTTGTGCTGATTGGTGTGGGAGTTCTGGTAATTTTCTGTAGGCAGAAGAAGAGGAGGGAACAGTATGGGTTGACCAATGTCTCTGGATCCAAAGATGACCCTTCTGCCCCACTTCAGCACTGGCAACAGAATGCACATCAGCCAACAAATAATACAGATCCAATGCTACCAAAGCATGCTCCTCTACTGAGCATTGGGTCAAAACCCCAATTGTCACCAGTGCATATTCCTGCTTCGCCACCACCAATGGGCATTTTGGGGACTGAGAAGCCACTCGCACCACCATCCCCAGGCATCTCCTTGGGTTTCTCAAAGAGCGCATTCACATATGAAGAATTAGCAATTGCAACAGATGGCTTCTCCAATATCAACCTCCTTGGTCAAGGTGGCTTTGGGTATGTCCATAAAGGAGTGCTTCCAAATGGGAGAGAGGTTGCTATTAAGCATTTAAAAGCTGGAAGTGGGCAGGGTGAACGAGAATTTCAGGCAGAGGTTGAGATCATTAGCCGCGTCCACCACAAGCATCTTGTTTCACTGGTTGGATACTGCACCACTGGGGCTCAGAGAATGCTTGTTTATGAGTTTGTTCCCAATGGCACCTTGCAACACCATTTGCATGGTACGGGGAGACCAACTATGAACTGGGCAACTAGAATTAAGATTGCCCTAGGCTCTGCAAAAGGATTGGCATACTTACATGAGGACTGTCATCCCAAGATCATACATCGTGATATCAAGGCAGCTAATATTCTTCTTGATCATAATTTTGAGGCCAAGGTTGCAGATTTTGGACTTGCTAAGTTTGCTTCTGATACTGATACTCATGTCTCCACCCGGGTAATGGGAACTTTTGGTTACTTGGCTCCTGAGTATGCATCAAGTGGGAAACTCACTGATAAGTCAGATGTCTTTTCCTTTGGGGTTGTGCTTCTGGAGTTGATCACTGGACGCCGGCCTATTGATAAAACTGAGAATGAGAGCATCGTTGACTGGGCAAGGCCTTTGCTCACACAAGCTCTGGAAGAAAGCAAGTACGGTGCTCTTGTTGATCCAAACTTGCAGAAGGACTACAATTACAATGAAATGGCTCGAATGGTTGCTTGTGCTGCTGTTTGTGTGCGTTATTTGGCACGTCTACGCCCGCGAATGAGCCAGGTAGTCCGAGCCTTGGAAGGAAACCTACCGCTGGATGATCTAAATGAAGGAATCATACCTGGGCACAGCAGTTTTCACTGTCGCTATGGTAGCTCAGATGATGACACTATCCATGGCAGTGAGGATCTGAAGAAATTCAGGAAGATGGCATTGGAAAGCCATGAGCAAGGTAGTATAGAGTGCACTGTGCCCATCAGCGCATCTGATCCTCACACATCTAACTCGAGTTTTGAGGGCCAACAAACTTGCAAAGAGGTGGAGATGGAGAAACACAAGGAAAACATTCAAAACTCAGGTGAAAGCTCTTAA 1656 48.07 MSSPAPASSATTNRTSPPPPPPTTNGTIQAPVASPPPPGGPRPPSGLTTATLITLIVGIVIGGLFVLIGVGVLVIFCRQKKRREQYGLTNVSGSKDDPSAPLQHWQQNAHQPTNNTDPMLPKHAPLLSIGSKPQLSPVHIPASPPPMGILGTEKPLAPPSPGISLGFSKSAFTYEELAIATDGFSNINLLGQGGFGYVHKGVLPNGREVAIKHLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNGTLQHHLHGTGRPTMNWATRIKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDHNFEAKVADFGLAKFASDTDTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVVLLELITGRRPIDKTENESIVDWARPLLTQALEESKYGALVDPNLQKDYNYNEMARMVACAAVCVRYLARLRPRMSQVVRALEGNLPLDDLNEGIIPGHSSFHCRYGSSDDDTIHGSEDLKKFRKMALESHEQGSIECTVPISASDPHTSNSSFEGQQTCKEVEMEKHKENIQNSGESS* 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3851523 3860298 + Vvi9g340 Vvi9g340 792051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g340 551 ProSiteProfiles Protein kinase domain profile. 184 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g340 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vvi9g340 551 Gene3D Transferase(Phosphotransferase) domain 1 260 462 - -
Vvi9g340 551 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK2 3 533 - -
Vvi9g340 551 SUPERFAMILY Protein kinase-like (PK-like) 160 455 IPR011009 -
Vvi9g340 551 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 533 - -
Vvi9g340 551 Gene3D Phosphorylase Kinase; domain 1 163 259 - -
Vvi9g340 551 MobiDBLite consensus disorder prediction 1 45 - -
Vvi9g340 551 MobiDBLite consensus disorder prediction 88 117 - -
Vvi9g340 551 Pfam Protein tyrosine and serine/threonine kinase 187 394 IPR001245 GO:0004672|GO:0006468
Vvi9g340 551 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Vvi9g340 551 SMART serkin_6 184 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g340 551 MobiDBLite consensus disorder prediction 13 44 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76864 PF07714 PK_Tyr_Ser-Thr 5.80E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g340 - - vvi:100242918 1024.62