Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g340 | ATGTCGTCACCTGCTCCGGCTTCATCGGCGACCACCAACAGGACCAGTCCACCACCTCCGCCTCCGACTACAAACGGAACCATTCAAGCTCCTGTCGCTTCTCCTCCGCCTCCGGGGGGTCCACGTCCGCCGAGTGGATTGACGACGGCGACACTGATTACGCTGATTGTTGGAATTGTGATCGGTGGACTGTTTGTGCTGATTGGTGTGGGAGTTCTGGTAATTTTCTGTAGGCAGAAGAAGAGGAGGGAACAGTATGGGTTGACCAATGTCTCTGGATCCAAAGATGACCCTTCTGCCCCACTTCAGCACTGGCAACAGAATGCACATCAGCCAACAAATAATACAGATCCAATGCTACCAAAGCATGCTCCTCTACTGAGCATTGGGTCAAAACCCCAATTGTCACCAGTGCATATTCCTGCTTCGCCACCACCAATGGGCATTTTGGGGACTGAGAAGCCACTCGCACCACCATCCCCAGGCATCTCCTTGGGTTTCTCAAAGAGCGCATTCACATATGAAGAATTAGCAATTGCAACAGATGGCTTCTCCAATATCAACCTCCTTGGTCAAGGTGGCTTTGGGTATGTCCATAAAGGAGTGCTTCCAAATGGGAGAGAGGTTGCTATTAAGCATTTAAAAGCTGGAAGTGGGCAGGGTGAACGAGAATTTCAGGCAGAGGTTGAGATCATTAGCCGCGTCCACCACAAGCATCTTGTTTCACTGGTTGGATACTGCACCACTGGGGCTCAGAGAATGCTTGTTTATGAGTTTGTTCCCAATGGCACCTTGCAACACCATTTGCATGGTACGGGGAGACCAACTATGAACTGGGCAACTAGAATTAAGATTGCCCTAGGCTCTGCAAAAGGATTGGCATACTTACATGAGGACTGTCATCCCAAGATCATACATCGTGATATCAAGGCAGCTAATATTCTTCTTGATCATAATTTTGAGGCCAAGGTTGCAGATTTTGGACTTGCTAAGTTTGCTTCTGATACTGATACTCATGTCTCCACCCGGGTAATGGGAACTTTTGGTTACTTGGCTCCTGAGTATGCATCAAGTGGGAAACTCACTGATAAGTCAGATGTCTTTTCCTTTGGGGTTGTGCTTCTGGAGTTGATCACTGGACGCCGGCCTATTGATAAAACTGAGAATGAGAGCATCGTTGACTGGGCAAGGCCTTTGCTCACACAAGCTCTGGAAGAAAGCAAGTACGGTGCTCTTGTTGATCCAAACTTGCAGAAGGACTACAATTACAATGAAATGGCTCGAATGGTTGCTTGTGCTGCTGTTTGTGTGCGTTATTTGGCACGTCTACGCCCGCGAATGAGCCAGGTAGTCCGAGCCTTGGAAGGAAACCTACCGCTGGATGATCTAAATGAAGGAATCATACCTGGGCACAGCAGTTTTCACTGTCGCTATGGTAGCTCAGATGATGACACTATCCATGGCAGTGAGGATCTGAAGAAATTCAGGAAGATGGCATTGGAAAGCCATGAGCAAGGTAGTATAGAGTGCACTGTGCCCATCAGCGCATCTGATCCTCACACATCTAACTCGAGTTTTGAGGGCCAACAAACTTGCAAAGAGGTGGAGATGGAGAAACACAAGGAAAACATTCAAAACTCAGGTGAAAGCTCTTAA | 1656 | 48.07 | MSSPAPASSATTNRTSPPPPPPTTNGTIQAPVASPPPPGGPRPPSGLTTATLITLIVGIVIGGLFVLIGVGVLVIFCRQKKRREQYGLTNVSGSKDDPSAPLQHWQQNAHQPTNNTDPMLPKHAPLLSIGSKPQLSPVHIPASPPPMGILGTEKPLAPPSPGISLGFSKSAFTYEELAIATDGFSNINLLGQGGFGYVHKGVLPNGREVAIKHLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNGTLQHHLHGTGRPTMNWATRIKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDHNFEAKVADFGLAKFASDTDTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVVLLELITGRRPIDKTENESIVDWARPLLTQALEESKYGALVDPNLQKDYNYNEMARMVACAAVCVRYLARLRPRMSQVVRALEGNLPLDDLNEGIIPGHSSFHCRYGSSDDDTIHGSEDLKKFRKMALESHEQGSIECTVPISASDPHTSNSSFEGQQTCKEVEMEKHKENIQNSGESS* | 552 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3851523 | 3860298 | + | Vvi9g340 | Vvi9g340 | 792051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g340 | 551 | ProSiteProfiles | Protein kinase domain profile. | 184 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi9g340 | 551 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 304 | 316 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi9g340 | 551 | Gene3D | Transferase(Phosphotransferase) domain 1 | 260 | 462 | - | - | |
Vvi9g340 | 551 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK2 | 3 | 533 | - | - | |
Vvi9g340 | 551 | SUPERFAMILY | Protein kinase-like (PK-like) | 160 | 455 | IPR011009 | - | |
Vvi9g340 | 551 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 3 | 533 | - | - | |
Vvi9g340 | 551 | Gene3D | Phosphorylase Kinase; domain 1 | 163 | 259 | - | - | |
Vvi9g340 | 551 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Vvi9g340 | 551 | MobiDBLite | consensus disorder prediction | 88 | 117 | - | - | |
Vvi9g340 | 551 | Pfam | Protein tyrosine and serine/threonine kinase | 187 | 394 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi9g340 | 551 | ProSitePatterns | Protein kinases ATP-binding region signature. | 190 | 212 | IPR017441 | GO:0005524 | |
Vvi9g340 | 551 | SMART | serkin_6 | 184 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi9g340 | 551 | MobiDBLite | consensus disorder prediction | 13 | 44 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76864 | PF07714 | PK_Tyr_Ser-Thr | 5.80E-50 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g340 | - | - | vvi:100242918 | 1024.62 |