Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g352 ATGTCGAATCCACCCGCGTCTCGTACCAAAGACTTCTTCGCCTCTCCAGCTCTCTCTCTTAGTCTTGCTGGGATTTTTCGAGATGGCGGCGCCGCGGCTGCAGCTGCGGCCAACATGGAGGTGGAGGAAGGGGATGAGGGGAGCGGAGGAGGGCGGAGGGATGATACGGTGGAGATAAGCAGTGAGAACTCAGGCCCGGCGAGGTCAAGATCCGAAGATGAGTTTGATGGAGAAGGAGAGGGTGATGAAGATGGAGAAGGTGAGAAGGGCAAGAAGAAGAAGAGGAAGAAATATCACAGACACACTGCTGAGCAAATCAGAGAAATGGAAGCGCTATTCAAGGAGTCACCACATCCAGATGAGAAGCAAAGGCAGCAACTAAGCAAGCAACTAGGCCTTGCTCCCAGGCAAGTCAAGTTCTGGTTTCAAAACCGACGAACTCAAATTAAGGCTATACAGGAGCGCCATGAAAACTCTCTATTGAAATCAGAAATGGAGAAGCTTAGAGATGAAAATAAGGCTATGAGGGAGACCATTAAGAAGTCTTGTTGCCCCAACTGCGGCTCAGCCACCTCTAGTAGAGACCCCACCATGACAACTGAAGAACAACAGCTGAGAATCGAAAATGCAAGGCTGAAAGCCGAGGTGGAAAAACTACGAGCAGTCATTGGGAAATACCCTCCTGGAACAGGATCACCTAGCTCCTCATGCTCGGCTGGAAATGATCATGAGAACAGAAGCTCTTTGGAGTTCTACACTGGAATTTTCGGGCTTGAGAAGTCGAGAATCATGGAGATAGTTAATCAGGCAATGGAGGAGCTCAAGAAGATGGCAACTGCTGGGGAACCGCTTTGGATTAGAAGCGTTGAGACTGGTCGTGAGATACTTAATTACGACGAGTACATGAGAGAATTTTCTGTCGAAAATTCAGGCAATGGAAGGCCAAAGAGGTCAATTGAGGCCTCAAGAGAGACTGGAGTTGTGTTTGTGGACCTCCCACGGCTTGTTCAAAGTTTCATGGATGTGAATCAATGGAAGGAAATGTTTCCATGCACAATCTCAAAGGCGGCTACCGTTGATATTATCTGCAATGGTGAAGGTCCTAATAGAAATGGAGCAGTTCAATTGATGTTTGCAGAGCTGCAAATGCTCACACCCATGGTGCCCACAAGAGAGGTGTACTTTGTCCGATTCTGCAAGCAGCTGAGTGCAGATCAATGGGCGATTGTTGATGTTTCCATTGATAAAGTTGAAGATAATATCGATGCGTCCCTTGTGAAATGCAGAAAACGTCCTTCTGGCTGCATCATTGAGGATAAATCCAATGGCCACTGCAAGGTGATCTGGGTGGAGCATTTGGAATGCCAGAAAAGCACGGTTCATACCATGTACCGCCAAATTGTTAACAGTGGTCTGGCCTTTGGTGCCAAGCATTGGATTGCGACTCTGCAACTCCAGTGCGAGCGGCTGGTGTTCTTCATGGCAACCAATGTCCCCACGAAGGACTCGAGCGGCGTTGCGACACTGGCGGGAAGGAAAAGCATTCTCAAGTTGGCACAAAGAATGACCTGGAGTTTTTGTCGAGCGCTGGGGGCATCAAGCTTTAACTCATGGACAAAGGTATCGAGTAAAACAGGAGACGACATAAGGGTGGCTTCCAGGAAGAACCTGAACGATCCTGGTGAGCCTCAAGGGGTGATCCTGTGTGCAGTTTCATCTGTATGGCTGCCAGTGGCTCCCCACGTCATATTCGATTTCTTAAGAGATGAAGCTCGCCGGAGTGAGTGGGACATCATGTTGAGTGGAGGGCCAGTGCAGTCAATTGCAAACTTGGCCAAAGGGCAGGATCGGGGCAATGCAGTCACTATTCAGACAATGAAATCCAAAGACAACAGTATGTGGGTGGTACAAGATACCTGCACAAATGCATATGAATCCATGGTGGTTTATGCTCCTGTAGACATTCCCGGCATGCAGTCTGTGATGACAGGGTGCGACTCCAGCAGCATTGCTATACTGCCGTCGGGTTTCTCAATTCTTCCAGATGGGGTTGAGTCAAGGCCTCTCGTCATCACTTCTAGGCCGGAGGAGAAGAGCACTGAAGGAGGATCTTTGCTCACCATAGCATTTCAAGTCTTAACAAACACCTCCCCCACAGCCAAACTAACTATGGAGTCTGTGGAGTCTGTGAACACTCTTGTATCATGTACATTGCAAAATATAAAAACAAGTTTGCAATGTGAGGATGGGTGA 2253 48.51 MSNPPASRTKDFFASPALSLSLAGIFRDGGAAAAAAANMEVEEGDEGSGGGRRDDTVEISSENSGPARSRSEDEFDGEGEGDEDGEGEKGKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEMEKLRDENKAMRETIKKSCCPNCGSATSSRDPTMTTEEQQLRIENARLKAEVEKLRAVIGKYPPGTGSPSSSCSAGNDHENRSSLEFYTGIFGLEKSRIMEIVNQAMEELKKMATAGEPLWIRSVETGREILNYDEYMREFSVENSGNGRPKRSIEASRETGVVFVDLPRLVQSFMDVNQWKEMFPCTISKAATVDIICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSADQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVHTMYRQIVNSGLAFGAKHWIATLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRMTWSFCRALGASSFNSWTKVSSKTGDDIRVASRKNLNDPGEPQGVILCAVSSVWLPVAPHVIFDFLRDEARRSEWDIMLSGGPVQSIANLAKGQDRGNAVTIQTMKSKDNSMWVVQDTCTNAYESMVVYAPVDIPGMQSVMTGCDSSSIAILPSGFSILPDGVESRPLVITSRPEEKSTEGGSLLTIAFQVLTNTSPTAKLTMESVESVNTLVSCTLQNIKTSLQCEDG* 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3967668 3972062 - Vvi9g352 Vvi9g352 792063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g352 750 Pfam START domain 266 489 IPR002913 GO:0008289
Vvi9g352 750 SUPERFAMILY Homeodomain-like 87 153 IPR009057 -
Vvi9g352 750 Coils Coil 202 222 - -
Vvi9g352 750 MobiDBLite consensus disorder prediction 32 102 - -
Vvi9g352 750 Gene3D - 264 486 IPR023393 -
Vvi9g352 750 SUPERFAMILY Bet v1-like 258 489 - -
Vvi9g352 750 MobiDBLite consensus disorder prediction 45 59 - -
Vvi9g352 750 CDD homeodomain 99 150 IPR001356 GO:0003677
Vvi9g352 750 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Vvi9g352 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 747 IPR042160 -
Vvi9g352 750 Coils Coil 151 178 - -
Vvi9g352 750 SUPERFAMILY Bet v1-like 519 736 - -
Vvi9g352 750 SMART START_1 265 489 IPR002913 GO:0008289
Vvi9g352 750 MobiDBLite consensus disorder prediction 224 243 - -
Vvi9g352 750 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Vvi9g352 750 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Vvi9g352 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 11 747 - -
Vvi9g352 750 Gene3D - 71 151 - -
Vvi9g352 750 SMART HOX_1 94 156 IPR001356 GO:0003677
Vvi9g352 750 CDD START_ArGLABRA2_like 260 488 - -
Vvi9g352 750 MobiDBLite consensus disorder prediction 229 243 - -
Vvi9g352 750 ProSiteProfiles START domain profile. 256 492 IPR002913 GO:0008289
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15230 PF01852 START 5.10E-58 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g352 K09338 - vvi:100256623 1408.28