Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g412 ATGGCCATTCCATCACTGGAACCACATAGTGGAAGCCAAACCTACAAATACCCCTTGCTAATGGAGAGGACAGAAAACCATGGTGACCGTGAACACATCATTGACATAACAAGGAATGATGATGCTTCATCGAGCTCATCTCATGATGATCACCATCCTGTAATGAACCCACCACAGCATGAAGAGAGACCATCAAGTAGCACTCAAACTCCTACTAATCAAACTTCATCAAACAGATTAAACTCCAGGAACTCATCATTCATGAGGAGAAGTGATGGTTATAGTCGGAGGAGGAGGAGCCCGTTGAATTCTGGGCTATGGATTTCTGTTGAGTTAGTTGTAACTGTGAGTCAGATCATAGCATCCATTGTTGTTCTGTCATTGTCAAGACATGAAAATCCACGAGCCCCATTGTTTGCATGGGTTGTGGGTTATGCATCTGGTTGTTTTGCAACACTTCCTATTCTTTACTGGCGCTATCGTACCCGAAACCAGACTATCTCGGTCAATCAAGCCTCAGAAACCGCCGGAGCAGCCACAAGACGCAGTAGATTTGTAGGAATCTTTCGTATGAGGTTCAGTGGAATGGTGGACCATTTTAAGATGGCCTTGGACTGCTTCTTTGCAGTGTGGTTTGTTGTGGGCAATGTGTGGATATTTGGAGGTCACTCTTCTCCCTCTGATGCTCCCAAATTGTACAGGTTATGCATAGTGTTCCTCACCTTTAGCTGTATTGGCTATGCTATGCCATTCATACTATGTGCAACAATCTGTTGCTGCTTGCCTTGTATAATTTCAATTCTGGGCTTTCGAGAGGACCTTTCTCAAACGAGAGGAGCTGCTCCAGAATCTATTGATGCCCTACCAACATACAAATTTAAGTTAAAGAAAAATGGAGATGTTGATGATCAGGAAGTCAACTCAGGAGCAGGTGAAGGTGGAGTCTTGGCTGCAGGAACTGAAAAAGAGCGTGCCATATCTGGTGAAGACGCTGTTTGTTGTATCTGCTTGGCAAAATATGCTGACAATGAAGAGCTGCGGGAGCTACCTTGCTGCCATTTTTTCCATGTGGAGTGTGTGGATAAATGGCTGAAGATCAATGCACTATGCCCCCTCTGTAAATTTGAGGTTGGTGGAACTAGTGGGGCATCACCCAATGCCACAAGCACCAGTGAGCACCAAAGGGAGAGGCCGACAGGTAACGCATCAACTGAAGGTGGTAGTAGTATATATGGTACTACGATGTTTTAA 1251 44.84 MAIPSLEPHSGSQTYKYPLLMERTENHGDREHIIDITRNDDASSSSSHDDHHPVMNPPQHEERPSSSTQTPTNQTSSNRLNSRNSSFMRRSDGYSRRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRHENPRAPLFAWVVGYASGCFATLPILYWRYRTRNQTISVNQASETAGAATRRSRFVGIFRMRFSGMVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLSQTRGAAPESIDALPTYKFKLKKNGDVDDQEVNSGAGEGGVLAAGTEKERAISGEDAVCCICLAKYADNEELRELPCCHFFHVECVDKWLKINALCPLCKFEVGGTSGASPNATSTSEHQRERPTGNASTEGGSSIYGTTMF* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4813814 4820062 - Vvi9g412 Vvi9g412 792123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g412 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 175 - -
Vvi9g412 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 171 393 - -
Vvi9g412 416 SMART ring_2 333 373 IPR001841 -
Vvi9g412 416 MobiDBLite consensus disorder prediction 39 100 - -
Vvi9g412 416 MobiDBLite consensus disorder prediction 381 416 - -
Vvi9g412 416 MobiDBLite consensus disorder prediction 39 58 - -
Vvi9g412 416 SUPERFAMILY RING/U-box 326 378 - -
Vvi9g412 416 MobiDBLite consensus disorder prediction 60 89 - -
Vvi9g412 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 380 IPR013083 -
Vvi9g412 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 175 - -
Vvi9g412 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 171 393 - -
Vvi9g412 416 CDD RING-H2_RNF111_like 332 375 - -
Vvi9g412 416 Pfam Ring finger domain 333 374 IPR001841 -
Vvi9g412 416 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g412 - - vvi:100261663 770.77