Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g413 ATGCAAATGGCAAACCAGAACGATGGTGAGCACATAATTGAGATTGGAGATCAGAGACCATCAATTCCTACTATTCAAACTCCTTCATCTTCTCCATCACATAGTAATCCATTCGAGTCTGGATTATGGATTTCTTTGCAGTTTATTCTAAGTGTTATCCAGATTGTTGCATCCATTGTGGTTTTGTCGCTGTCCAAACTAAATGGAGATCCAGACTACAAACTCTTTTCGTGGGTTGTGGGCTATGCTTGTGGCTGTGTTCTCATGCTTCCTCTTCTCTACTGCAGATATATTTTAATTTTAGTGAAGAAGCTGTTTCTGATTTGCAGGCTGTATGGAATAGTGGAAGTGTTGAAGATGTCCTTGAGCTGCTTCTTTGCAGTGTGGTTCGTCCTGGGCAATGTATGGGTTTTTGGATCTTCATCTACTGGCAAGGATGATACCAAATTGGAAACGTTATGCCTAGTGTTCCTGGCGTCCGGCTGCATTATGTATGCGATGCCAGTCTTTAGATGTGCTGCCTTCTGTCTGTTGTTGCCTTTTTTGATTTTGCCAACACTGGCCTCTCCACAAGAACAAGCTAGAGAAGCCAACCCAGATTATTCCTTTAATGCACTGCCAACCTACAATTTTAAGTTAAAGGAAAATGGAACAGGTGAAAGTGGAGTCTTAGCTGCAGGGACAGATAAGGAGCGTGCCATATCCGGAGAAGATGCAGTTTGCTGCATTTGCTTGGGAAAATATGCAGACAATGATGAGGTGCGGGAGCTTCCATGCAGCCATTTCTTCCATGTGGAGTGCGTGGATAAATGGCTGAAGATTAACCCTCGGTGTCCTCTCTGTCAATCTGAGCTTGGAGGGGCTGGTGGGGCTTCAACATTGCAGCACATGATTGATATCGAAGAAATACCACCAATTCCCACTAATCAAAATTCTTCTACTTCATCACATGTCCACTCACTCGATTCTGGTTTATGCCTTTCAATTCAGTTAATTCTAACCGTGACCCAGATGGTAGCTTCCCTTCTGTTTGGAGTGGTGCGATTCTTCAAGATGACCTTGAGCTGCTTCTTTCTAGTGTGGTTGGTTTTAGGCATTGTATGGATTCCCGGAGCTCTATTTTCTATCCGTGATGATGCAACCTTATTGGAAACGTTATGCCTAGTGTTGTTCCTCTCTGGATGTTTTGTGTATGCGATACCAGGCATGAGATTTGCATCACTCTGTCTGTTTTTGCCTTGTTTGATTTGCGCAACACTGGTCTCTCCACATGAAAAACCTAGAGGAGCCACCCCAGAATCCATTAATGAACTGCCTACCTACAAGTTTAAGTCAAAGGAAAATGGAAGAGGTGAAGGTGGGGTCTGGGCTGCAGGAACCATAAAGGAGCGCACCTTATCTGAGGAAGATGCAGTTTGTTGCATTTGCTTGGGACAATATGCGGACAATGAAGAGCTGCGGGAGCTGCCATGCTGCAGCCATTTTTTCCATGCGGAGTGTGTGGATCAATGGCTGAAGATCAAAGCATGCTGTCCTCTCTGTCAATCTGAGCTGGGCGGGGCCGGAAGATCAGGTGACGAGGGTGGAATAGTCTTGGCCGCAGGAACAGAAAAGGAGCGCACCTTATCTGGAGAAGAAGTGAGTAAAGTGATGGAAGTCTTCTGGTTAACCATGAGCTGCTTCTTTGTAGTGTGGTTCGTTTTTGGTTCTGTATGTTTTTTTGGAGTTTCTTCTTCTATCCATGATGCACCCATATTGGAAGGTTTATTCAAAGCGTTGCTTCTCAGTGGCTGTACAATATATGCAATGCCAGGCATTGCAATAGCATCATACTGTCTGTTTTTCTCTTGGTTGATTTTGTCATTACTACTGCTCAAACTAAGGGAAAAACATAGAGGAACCAGTACCCCAGATTCCCCTCCTAATGTACTGCCTACCTACAAGTTTAAATCAAAGGAAAATGGAGGTGGAGTGCTCTTGGCCGCAGGAACCAAAAAGAAGAGCGCCAGCTTATCTGGAGAAGATGTGGTTTGTTGCATTTGCTTGGGAAATTATGCAGACAATGAAGAGCTGCGTGAGCTACCATGCTGCAGCCATTTCTTCCATGTGGAGTGTGTGGATAAATGGCTGAAGATCAAAGCACGCTGCCCTCTCTGTCAATCTGAGCATTTAATTCAGAGAAGCTGGTTTCCTAGTTGCAGGCTCTATGTGGTGGTGGAAGTCTTGAAGATGGTATTGGGCTGCTTCTTTGCTTTTTGGTTTGTTTTGGGCAATATATGGGCTGCTAGAGTTTCCTCTGATGCAGAAAAATTGGACATGTTATGCCAACTTTTACTCAAGACTGCATGTATTATGTATGCCATCCCAGCCATAGGATGTTTCTTATTGCCTCGCATGATTTCTTCAGCATTAATGGCCCCTAGAAACCTGACTAAAAATGGAACAGATGCAGTTGGAGTCTTGGCTGCAGGAACCGAGCAGGAGCGTGCCATATCTGAAGAAGATGCAGTTTGTTGTATTTGCTTGGAAAAATATGTTGACAATGATGAGCTGCGAGAGCTGCCATGCGGCCATTTCTTCCACAAGGAGTGTGTGGATGAGTGGCTAAAGATCAATGCACGGTGTCCTCTCTGCCAATCTGAGATAGCTAGGACTCATGGGGCTTCGACCTTTGCCGCAGGCTCCAGCCAGAATCCAAGTGAGAGGAGGACGGGTAGCGCATTGGATGAAGATGGCGGTGGACATGGAAGTACTGTGGCTTGA 2763 45.1 MQMANQNDGEHIIEIGDQRPSIPTIQTPSSSPSHSNPFESGLWISLQFILSVIQIVASIVVLSLSKLNGDPDYKLFSWVVGYACGCVLMLPLLYCRYILILVKKLFLICRLYGIVEVLKMSLSCFFAVWFVLGNVWVFGSSSTGKDDTKLETLCLVFLASGCIMYAMPVFRCAAFCLLLPFLILPTLASPQEQAREANPDYSFNALPTYNFKLKENGTGESGVLAAGTDKERAISGEDAVCCICLGKYADNDEVRELPCSHFFHVECVDKWLKINPRCPLCQSELGGAGGASTLQHMIDIEEIPPIPTNQNSSTSSHVHSLDSGLCLSIQLILTVTQMVASLLFGVVRFFKMTLSCFFLVWLVLGIVWIPGALFSIRDDATLLETLCLVLFLSGCFVYAIPGMRFASLCLFLPCLICATLVSPHEKPRGATPESINELPTYKFKSKENGRGEGGVWAAGTIKERTLSEEDAVCCICLGQYADNEELRELPCCSHFFHAECVDQWLKIKACCPLCQSELGGAGRSGDEGGIVLAAGTEKERTLSGEEVSKVMEVFWLTMSCFFVVWFVFGSVCFFGVSSSIHDAPILEGLFKALLLSGCTIYAMPGIAIASYCLFFSWLILSLLLLKLREKHRGTSTPDSPPNVLPTYKFKSKENGGGVLLAAGTKKKSASLSGEDVVCCICLGNYADNEELRELPCCSHFFHVECVDKWLKIKARCPLCQSEHLIQRSWFPSCRLYVVVEVLKMVLGCFFAFWFVLGNIWAARVSSDAEKLDMLCQLLLKTACIMYAIPAIGCFLLPRMISSALMAPRNLTKNGTDAVGVLAAGTEQERAISEEDAVCCICLEKYVDNDELRELPCGHFFHKECVDEWLKINARCPLCQSEIARTHGASTFAAGSSQNPSERRTGSALDEDGGGHGSTVA* 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4821805 4838497 - Vvi9g413 Vvi9g413 792124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g413 920 ProSiteProfiles Zinc finger RING-type profile. 241 282 IPR001841 -
Vvi9g413 920 SMART ringv_2 837 879 IPR011016 GO:0008270
Vvi9g413 920 SMART ringv_2 677 720 IPR011016 GO:0008270
Vvi9g413 920 SMART ringv_2 472 515 IPR011016 GO:0008270
Vvi9g413 920 SMART ringv_2 240 282 IPR011016 GO:0008270
Vvi9g413 920 ProSiteProfiles Zinc finger RING-type profile. 838 879 IPR001841 -
Vvi9g413 920 SUPERFAMILY RING/U-box 464 518 - -
Vvi9g413 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 803 884 IPR013083 -
Vvi9g413 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 286 IPR013083 -
Vvi9g413 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 724 IPR013083 -
Vvi9g413 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 519 IPR013083 -
Vvi9g413 920 MobiDBLite consensus disorder prediction 890 920 - -
Vvi9g413 920 SUPERFAMILY RING/U-box 672 732 - -
Vvi9g413 920 PANTHER PROTEIN, PUTATIVE-RELATED 31 98 - -
Vvi9g413 920 PANTHER PROTEIN, PUTATIVE-RELATED 344 521 - -
Vvi9g413 920 PANTHER PROTEIN, PUTATIVE-RELATED 107 292 - -
Vvi9g413 920 PANTHER PROTEIN, PUTATIVE-RELATED 548 722 - -
Vvi9g413 920 PANTHER PROTEIN, PUTATIVE-RELATED 732 889 - -
Vvi9g413 920 SUPERFAMILY RING/U-box 234 285 - -
Vvi9g413 920 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 107 292 - -
Vvi9g413 920 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 732 889 - -
Vvi9g413 920 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 31 98 - -
Vvi9g413 920 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 344 521 - -
Vvi9g413 920 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 548 722 - -
Vvi9g413 920 CDD RING-H2_RNF111_like 240 281 - -
Vvi9g413 920 SUPERFAMILY RING/U-box 830 884 - -
Vvi9g413 920 SMART ring_2 838 878 IPR001841 -
Vvi9g413 920 SMART ring_2 678 719 IPR001841 -
Vvi9g413 920 SMART ring_2 241 281 IPR001841 -
Vvi9g413 920 SMART ring_2 473 514 IPR001841 -
Vvi9g413 920 Pfam Ring finger domain 678 720 IPR001841 -
Vvi9g413 920 Pfam Ring finger domain 473 515 IPR001841 -
Vvi9g413 920 Pfam Ring finger domain 838 879 IPR001841 -
Vvi9g413 920 Pfam Ring finger domain 241 282 IPR001841 -
Vvi9g413 920 ProSiteProfiles Zinc finger RING-type profile. 678 720 IPR001841 -
Vvi9g413 920 ProSiteProfiles Zinc finger RING-type profile. 473 515 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g371 Vvi9g413 ECH
Vvi9g413 Vvi11g392 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g413 - - vvi:100246284 525.398