Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g460 ATGGTGGGTGCATCGAGCTCATGGTCTCGCGCACTGGTTCAGATCTCACCCTACACCTTCTCCGCCATCGGTATCGCCATCGCCATCGGCGTTTCCGTCTTGGGTGCCGCTTGGGGAATTTATATAACTGGAAGTAGTTTAATTGGTGCTGCCATCAAAGCTCCTCGGATTACTTCAAAAAATCTGATCAGTGTCATCTTCTGTGAGGCTGTTGCTATATATGGAGTTATTGTGGCAATCATTCTTCAAACAAAGCTAGAGAGTGTGCCTGCATCCAATATTTATGCACCGGAGTCCCTTAGAGCCGGATATGCAATCTTTGCCTCTGGAATTATTGTGGGTTTTGCCAACCTTGTCTGTGGGTTGTGCGTAGGAATAATTGGAAGCAGTTGTGCTTTATCTGATGCTCAAAACTCATCACTTTTTGTTAAGATCCTTGTGATTGAGATCTTTGGCAGTGCACTTGGATTGTTTGGGGTGATTGTGGGAATAATCATGTCCGCCCAAGCAACATGGCCGGCCAGTACGGCATGA 534 46.63 MVGASSSWSRALVQISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASNIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPASTA* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5495169 5499348 + Vvi9g460 Vvi9g460 792171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g460 177 CDD ATP-synt_Vo_c_ATP6F_rpt2 102 166 - -
Vvi9g460 177 SUPERFAMILY F1F0 ATP synthase subunit C 16 85 IPR035921 -
Vvi9g460 177 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi9g460 177 Pfam ATP synthase subunit C 23 82 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi9g460 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 36 60 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi9g460 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 62 86 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi9g460 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi9g460 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 168 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi9g460 177 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 3 174 - -
Vvi9g460 177 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 174 - -
Vvi9g460 177 Gene3D - 18 173 IPR035921 -
Vvi9g460 177 CDD ATP-synt_Vo_c_ATP6F_rpt1 20 82 - -
Vvi9g460 177 SUPERFAMILY F1F0 ATP synthase subunit C 99 167 IPR035921 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g460 K03661 - vvi:100253217 321.242