Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g478 ATGTATGGGTTCCCAATTAGTCATTGGAAAATAATAAGTTTAGTGTTTTGGCTTGGTTCTGTCATGAGTTGGTTGACCGCTCTTCCAGCCCCACCATTACTTATTCTGAAGCAGGACCAAAATGGACCTGGAGTTGCTGGCATTAAATCCCTAAGAGTGCTTGCACTACTTGGGGCAGGTGTTTCAGGCCTTTTGAGCTTTGCAACAATAGCTTCTTCAGATGAGGCTGAACATGGCCTGGCATGTCCAAACTATCCATGGCCTCACAGCGGCATTCTCAGTTCATATGACCATGCTTCGATTCGGCGGGGTCACCAGGTTTACCAGCAAGTTTGTGCTTCTTGCCATTCAATGTCTTTAATTTCATTTCGTGATCTTGTGGGTGTGGCATACACTGAAGAAGAGACGAAGGCTATGGCAGCTGAGATTGAAGTGGATGATGGGCCTAATGATGAAGGTGAGATGTTTACTCGCCCTGGAAAGCTAAGTGATCGTTTTCCTCAGCCTTATGCAAATGAACAAGCAGCTAGATTTGCTAATGGAGGAGCATATCCTCCAGATCTAAGTCTCATCACCAAGGCCCGCCACAATGGTCAGAATTATGTATTTGCTCTTTTAACTGGTTACCGTGATCCTCCAGCTGGTGTTTCAATTCGAGACGGGCTGCACTATAATCCTTATTTCCCTGGTGGGGCAATAGCTATGCCCAAAATGCTCATCGATGGTGCTGTTGAGTATGAAGATGGTACCCCTGCCACAGAAGCACAAATGGGGAAAGATGTTGTCACATTTTTATCATGGGCTGCAGAGCCAGAAATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTGTTGTCACTTGCACTTCTCCAAGCAGCTTACTACCGACGCCTAAAATGGTCAATCTTCAAGTCCCGTAAGCTGATTGTCGATGTTGTCAACTGA 951 45.32 MYGFPISHWKIISLVFWLGSVMSWLTALPAPPLLILKQDQNGPGVAGIKSLRVLALLGAGVSGLLSFATIASSDEAEHGLACPNYPWPHSGILSSYDHASIRRGHQVYQQVCASCHSMSLISFRDLVGVAYTEEETKAMAAEIEVDDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIRDGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSIFKSRKLIVDVVN* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5759462 5762990 - Vvi9g478 Vvi9g478 792189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g478 316 Gene3D - 76 271 IPR036909 GO:0009055|GO:0020037
Vvi9g478 316 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 271 315 IPR021157 -
Vvi9g478 316 Gene3D - 272 315 - -
Vvi9g478 316 ProSiteProfiles Cytochrome c family profile. 99 251 IPR009056 GO:0009055|GO:0020037
Vvi9g478 316 PANTHER CYTOCHROME C1 35 316 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 Pfam Cytochrome C1 family 87 303 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 35 316 - -
Vvi9g478 316 PRINTS Cytochrome C1 signature 85 104 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 105 124 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 150 170 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 183 207 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 221 232 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 232 251 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 252 271 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 PRINTS Cytochrome C1 signature 271 286 IPR002326 GO:0009055|GO:0020037
Vvi9g478 316 SUPERFAMILY Cytochrome c 80 270 IPR036909 GO:0009055|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g478 K00413 - vvi:100261810 569.696