Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g5 ATGGCGGAGGATCTGGACAAACCATTGCTTGATCCTGAGAATTTCAACCGAGAAGGCATTGATCTGGAACGGATACCGTTGGAAGAAGTTTTTGAACAACTGAGAACATCACGCGGAGGACTTTCATCTGAAGATGCTGAGGCCCGCTTGATAATTTTTGGCCCAAACAAGCTTGAAGAAAAGCCTGAGAACAAATTTTTGAAATTTCTTAGTTTTATGTGGAATCCCTTGTCATGGGTTATGGAAGCTGCAGCTGTGATGGCGATCGTACTTGCTAACGGTGGAGGGGAAGGTCCTGACTGGCAGGACTTTGTGGGGATCCTCTGTCTATTGATTATCAATTCAACAATTAGTTTTATAGAGGAAAATAATGCTGGGAATGCAGCAGCAGCACTTATGGCCCGTTTAGCTCCAAAAACAAAGGTTCTCAGAGATGGGCACTGGCAAGAGCAAGATGCAGCTATTCTTGTTCCAGGAGATATTATTAGCATAAAGCTCGGTGATATCATCCCTGCAGATGCTCGCCTACTTGAAGGAGACCCACTAAAGATTGACCAGTCAGCTCTTACTGGAGAATCCCTACCCGTCACCAAAAGAACAGGTGATGAAGTTTTTTCTGGTTCAACGTGTAAACATGGAGAGATTGAAGCTGTGGTGATAGCAACTGGAGTTCATTCTTTCTTTGGAAAAGCAGCACATTTAGTTGACTCCACTGAAGTTATTGGACATTTCCAGAAGGTTCTTACCTCTATCGGAAACTTCTGCATTTGCTCTATAGCTGTGGGAATGATTCTTGAAATCATTGTCATGTTCCCTATACAGCACCGATCATACCGGAATGGTATCAACAACCTTCTTGTGCTCTTAATTGGAGGAATACCCATAGCTATGCCTACGGTGTTATCTGTTACACTTGCTATTGGTTCACATCGACTATCTCAACAGGGTGCCATTACAAAAAGAATGACTGCAATTGAAGAAATGGCTGGAATGGATGTCCTCTGCAGTGATAAAACTGGAACTCTTACTCTGAATCGCCTCACTGTTGATCGAAACCTTATTGAGGTTTTTGCCAAAGATATGGACAAAGACACAGTTGTCTTGCTTGCAGCCAGAGCATCAAGACTGGAAAATCAGGATGCCATTGATACAGCCATCATTAACATGCTTGCTGATCCAAAGGAGGCACGTGCAAACATCACAGAAGTGCATTTTCTGCCTTTCAATCCTGTGGACAAGCGTACTGCAATTACTTACATTGATTCTAATGGTAACTGGATTCGGGCCAGCAAAGGAGCTCCTGAACAGTACCCACATCATTCAAAAAAAAAAAAAAAACAGAACAAAAATTCAAGGTTCTCCTTTTTGTATATTCTAAATCTCTGCCAAGAGAAAGAAGAAATTGCTGGAAAAGTCCATGCCATTATTGACAAGTTTGCTGAAAGGGGTTTGCGATCTCTTGGGGTTGCATATCAGGAGGTTCCAGAACAAACTAAGGAAAGTCCTGGAGGTCCTTGGACATTTTGTGGGTTGTTGCCCTTGTTTGATCCTCCAAGACATGACAGTGCTGAGACCATCCGCAGGGCGCTTAACCTTGGGGTTTGTGTTAAGATGATTACAGGTGATCAGTTGGCAATCGCAAAGGAGACAGGTCGTAGACTAGGAATGGGAACAAACATGTACCCCTCTTCATCATTGTTGGGACGTGAGAAAGATGAAAGTGAAGTTCTTCCAGTGGATGAGCTTATTGAAAAGGCTGATGGGTTCGCTGGTGTATTCCCTGAACATAAGTACGAAATTGTGAGAATTCTACAAGAAAAGAAGCATGTGTGTGGAATGACTGGAGATGGCGTGAATGATGCGCCTGCGCTGAAGAAAGCAGATATTGGAATAGCTGTGGCGGATGCTACAGATGCTGCAAGGAGTGCTGCTGATATTGTCTTAACAGAACCTGGTTTAAGTGTGATTATCAGTGCTGTCTTAACTAGCCGAGCTATATTCCAGAGAATGAAGAATTATACAATATATGCCGTCTCTATAACCATAAGGATTGTGCTTGGTTTCGTGCTCCTAGCATTGATCTGGGAATATGACTTCCCACCATTCATGGTTCTGATTATTGCTATACTAAATGATGGGACCATCATGACCATTTCCAAAGATCGGGTCAAGCCATCTCCAAAACCAGACAGTTGGAAGCTCAATGAAATATTTGCAACTGGCGTTGTCATTGGCACTTATCTTGCTTTAGTTACTGTCTTATTTTACTGGGTTATAGACAGTACCACTTTCTTTCAGACCCACTTCCATGTGAGTACCCTAAAGAGTACTGAGGAGATCTCATCTGCTATATATCTGCAAGTCAGCATTATCAGCCAGGCTCTCATATTTGTTACACGCAGTCAAAGTTGGTCATTTATGGAAAGGCCTGGGGCTCTTTTGATGTGTGCATTTGTGGTGGCTCAACTGGTGGCTACATTGATTGCAGTCTATGCAGAGATTAGTTTTGCTTCAATTAGTGGCATTGGCTGGGGATGGGCAGGTGTCATATGGATATATAGCGTGATCTTCTATGTACCCCTTGACATTATCAAGTTTACAGTTCGCTATGCTTTGAGTGGTGAAGCCTGGAATCTCTTGTTCGATAGGAAGACAGCTTTTACTTCTAAGAAGGATTATGGGAAGGAAGATAGAGAGGCTAAGTGGGTACTTTCTCAAAGAACCATACAAGGATTGATGTCTTCAGAGCTTGAGATCAACGGCAGGCGGTCTTCTCTGATTGCTGAACAGGCCAGGAGGCGTGCAGAAATAGCCAGGCTGGGAGAGATACACACATTGAGGGGACATGTAGAATCAGTGGTGAGGCTTAAGAATTTGGACATCAATGTGATCCAGGCAGCTCATACGGTATGA 2913 43.25 MAEDLDKPLLDPENFNREGIDLERIPLEEVFEQLRTSRGGLSSEDAEARLIIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGEGPDWQDFVGILCLLIINSTISFIEENNAGNAAAALMARLAPKTKVLRDGHWQEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEVIGHFQKVLTSIGNFCICSIAVGMILEIIVMFPIQHRSYRNGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFAKDMDKDTVVLLAARASRLENQDAIDTAIINMLADPKEARANITEVHFLPFNPVDKRTAITYIDSNGNWIRASKGAPEQYPHHSKKKKKQNKNSRFSFLYILNLCQEKEEIAGKVHAIIDKFAERGLRSLGVAYQEVPEQTKESPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKDESEVLPVDELIEKADGFAGVFPEHKYEIVRILQEKKHVCGMTGDGVNDAPALKKADIGIAVADATDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPKPDSWKLNEIFATGVVIGTYLALVTVLFYWVIDSTTFFQTHFHVSTLKSTEEISSAIYLQVSIISQALIFVTRSQSWSFMERPGALLMCAFVVAQLVATLIAVYAEISFASISGIGWGWAGVIWIYSVIFYVPLDIIKFTVRYALSGEAWNLLFDRKTAFTSKKDYGKEDREAKWVLSQRTIQGLMSSELEINGRRSSLIAEQARRRAEIARLGEIHTLRGHVESVVRLKNLDINVIQAAHTV* 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 122428 139325 + Vvi9g5 Vvi9g5 791716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g5 970 PANTHER CALCIUM-TRANSPORTING ATPASE 1 950 - -
Vvi9g5 970 Gene3D - 100 840 - -
Vvi9g5 970 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Vvi9g5 970 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Vvi9g5 970 PRINTS P-type cation-transporting ATPase superfamily signature 510 521 - -
Vvi9g5 970 PRINTS P-type cation-transporting ATPase superfamily signature 532 542 - -
Vvi9g5 970 PRINTS P-type cation-transporting ATPase superfamily signature 614 633 - -
Vvi9g5 970 PRINTS P-type cation-transporting ATPase superfamily signature 637 649 - -
Vvi9g5 970 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 107 364 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 589 699 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 Pfam haloacid dehalogenase-like hydrolase 331 628 - -
Vvi9g5 970 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 872 IPR023298 -
Vvi9g5 970 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Vvi9g5 970 Pfam E1-E2 ATPase 136 314 - -
Vvi9g5 970 SFLD C1.7: P-type atpase like 317 665 - -
Vvi9g5 970 PRINTS H+-transporting ATPase (proton pump) signature 472 490 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 PRINTS H+-transporting ATPase (proton pump) signature 586 602 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 PRINTS H+-transporting ATPase (proton pump) signature 614 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 PRINTS H+-transporting ATPase (proton pump) signature 645 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 PRINTS H+-transporting ATPase (proton pump) signature 785 806 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g5 970 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Vvi9g5 970 Gene3D - 922 970 - -
Vvi9g5 970 SUPERFAMILY HAD-like 331 661 IPR036412 -
Vvi9g5 970 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 40 831 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vvi9g5 970 Gene3D - 138 222 - -
Vvi9g5 970 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 1 950 - -
Vvi9g5 970 Gene3D - 347 515 IPR023299 GO:0000166
Vvi9g5 970 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Vvi9g5 970 CDD P-type_ATPase_H 40 866 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vvi9g5 970 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Vvi9g5 970 Gene3D - 332 651 IPR023214 -
Vvi9g5 970 SFLD p-type atpase 317 665 IPR044492 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g5 K01535 - vvi:100265284 1790.78