Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g536 | ATGGTACAGACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACTCAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCGCTCGAGCCTACGACGAGGCGGCGGTGATGATGAGCGGGCGCAATGCCAAAACAAACTTCCCCACTGCCGTGAATCACGCCAACAATGAGGAGTCGTCCTCTTCCTCTCCCACCGCTCTTTCTGCAATACTCAGCGCCAAGCTGCGTAAATGTTGTAAATCCCCATCTCCCTCCCTCACTTGCCTAAGGCTGGACACCGAGAATTCCAATATAGGAGTGTGGCAGAAGCGGGCGGGGACGCGATCCGACTCCAATTGGGTGATGACAGTGGAGCTTGGGAAGAAGAATGAGCAGGCGGCGGAGGCAGGAGCGGAGGCGGAAGAGTTCAAAATAAATGAATTGGGTTTCATCAACTTCGTTTCTCTTTGTGTGTTTGTGTGGGGTGTGAGCATTTTGAATTATACATTGTGCTCTAAGATATTGGAGTTGTGA | 558 | 52.69 | MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDEAAVMMSGRNAKTNFPTAVNHANNEESSSSSPTALSAILSAKLRKCCKSPSPSLTCLRLDTENSNIGVWQKRAGTRSDSNWVMTVELGKKNEQAAEAGAEAEEFKINELGFINFVSLCVFVWGVSILNYTLCSKILEL* | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6657637 | 6658829 | - | Vvi9g536 | Vvi9g536 | 792247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g536 | 185 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 145 | - | - | |
Vvi9g536 | 185 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g536 | 185 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE | 1 | 145 | - | - | |
Vvi9g536 | 185 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15238 | PF00847 | AP2 | 1.80E-13 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g536 | - | - | vvi:100250826 | 267.314 |