Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g536 ATGGTACAGACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACTCAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCGCTCGAGCCTACGACGAGGCGGCGGTGATGATGAGCGGGCGCAATGCCAAAACAAACTTCCCCACTGCCGTGAATCACGCCAACAATGAGGAGTCGTCCTCTTCCTCTCCCACCGCTCTTTCTGCAATACTCAGCGCCAAGCTGCGTAAATGTTGTAAATCCCCATCTCCCTCCCTCACTTGCCTAAGGCTGGACACCGAGAATTCCAATATAGGAGTGTGGCAGAAGCGGGCGGGGACGCGATCCGACTCCAATTGGGTGATGACAGTGGAGCTTGGGAAGAAGAATGAGCAGGCGGCGGAGGCAGGAGCGGAGGCGGAAGAGTTCAAAATAAATGAATTGGGTTTCATCAACTTCGTTTCTCTTTGTGTGTTTGTGTGGGGTGTGAGCATTTTGAATTATACATTGTGCTCTAAGATATTGGAGTTGTGA 558 52.69 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDEAAVMMSGRNAKTNFPTAVNHANNEESSSSSPTALSAILSAKLRKCCKSPSPSLTCLRLDTENSNIGVWQKRAGTRSDSNWVMTVELGKKNEQAAEAGAEAEEFKINELGFINFVSLCVFVWGVSILNYTLCSKILEL* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6657637 6658829 - Vvi9g536 Vvi9g536 792247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g536 185 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vvi9g536 185 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vvi9g536 185 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Vvi9g536 185 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vvi9g536 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 145 - -
Vvi9g536 185 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vvi9g536 185 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vvi9g536 185 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vvi9g536 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 145 - -
Vvi9g536 185 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g478 Vvi9g536 ECH
Vvi9g536 Vvi11g472 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15238 PF00847 AP2 1.80E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g536 - - vvi:100250826 267.314