Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g537 ATGTCTGAATTCAATGAGATTCCGCTTCATGGAACGCTCCACGCTACGATATTTGAGATCGACAGGCTCCACAGCGGAGGCGCTCCCAAATTCTTCCGAAAGCTTGTGGAGAACATTGAGGAGACTGTCGGTTTTGGCAAAGGAACCTCTAAACTCTATGCAACTATTGATATAGGAAGAGCTAGAGTTGGGAGGACTCGGATGATAGAAAATGAACCCTCCAATCCCAGGTGGTATGAATCATTTCACATTTACTGTGCCCATATGGCCGGGCATATTATATTCACTGTAAAAGATGACAATCCCATTGGGGCGACTTTGATTGGAAGAGCATCTGTACCTATTCAGGAGATCTTAGGGGGAGAGGAAGTAGATAAATGGGTAGAAATTGTTAATGAAGAGCTGAAGCCTATACATGGAGGTTCTAAGATCCATGTGAAACTACAATATTTTGAAGTCACTGCAGATCGTAGTTGGGGTCGGGGAATTAGAAATGCTCATGTTCCAGATAATTTTGTCCCAAAAATACCCCTCGCCGATGGCAAGTACTATGAGCCCCGCAGATGTTGGGAAGATGTCTTTGATGCAATCAATAACGCAAAACACTTGATCTACATTACTGGCTGGTCTGTATACACAGAAATCACCTTGGTGCGGGACTCAAGGAGACCAAAACCAGGAGGAGACTTGACCATTGGTGAGTTGCTTAAGAAGAAGGCAAGTGAAGGTGTTAGGGTTCTAATGCTTGTTTGGGATGATCGAACGTCTGTTCCTTTACTGAAAAAGGATGGCTTGATGGGTACCCATGACGAAGAAACTGAACATTACTTTCACGACACTGATGTACACTGTGTATTGTGCCCCCGCAATCCTGATGATGGTGGAAGTATAGTTCAGGATTTACAAATTTCTACCATGTTCACTCATCACCAGAAGATTGTTGTGGTGGACAGCGAGATGCCCAGTGGAGGATCAGAAAAGAGGAGGATTGACACTAGACACAGCACACCATGA 1014 44.38 MSEFNEIPLHGTLHATIFEIDRLHSGGAPKFFRKLVENIEETVGFGKGTSKLYATIDIGRARVGRTRMIENEPSNPRWYESFHIYCAHMAGHIIFTVKDDNPIGATLIGRASVPIQEILGGEEVDKWVEIVNEELKPIHGGSKIHVKLQYFEVTADRSWGRGIRNAHVPDNFVPKIPLADGKYYEPRRCWEDVFDAINNAKHLIYITGWSVYTEITLVRDSRRPKPGGDLTIGELLKKKASEGVRVLMLVWDDRTSVPLLKKDGLMGTHDEETEHYFHDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPSGGSEKRRIDTRHSTP* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6678925 6683654 + Vvi9g537 Vvi9g537 792248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g537 337 SUPERFAMILY Phospholipase D/nuclease 170 319 - -
Vvi9g537 337 ProSiteProfiles C2 domain profile. 1 128 IPR000008 -
Vvi9g537 337 CDD C2_plant_PLD 9 151 - -
Vvi9g537 337 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 152 IPR035892 -
Vvi9g537 337 SMART C2_3c 12 127 IPR000008 -
Vvi9g537 337 PANTHER PHOSPHOLIPASE D 8 166 IPR015679 -
Vvi9g537 337 PANTHER PHOSPHOLIPASE D 165 330 IPR015679 -
Vvi9g537 337 PANTHER PHOSPHOLIPASE D 8 166 - -
Vvi9g537 337 PANTHER PHOSPHOLIPASE D 165 330 - -
Vvi9g537 337 Gene3D C2 domain 10 159 IPR035892 -
Vvi9g537 337 Pfam C2 domain 39 130 IPR000008 -
Vvi9g537 337 Gene3D Endonuclease Chain A 177 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g537 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - vvi:100232987 653.284
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g479 Vvi9g537 ECH
Vvi9g537 Vvi11g474 ECH
Vvi9g537 Vvi11g475 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g537 . Blo06g00662 . Bda10g00782 Bpe06g00699 . . . . . Cma01g00139 . Car01g00123 . Sed05g1449 . Cpe17g00574 Bhi01g03552 Tan04g2586 Cmetu07g1549 Lac11g0678 Hepe02g1369 . . Cla07g01209 Cam07g1296 Cec07g1387 Cco07g1343 Clacu07g1268 Cmu07g1245 Cre07g1625 . . . . Lsi02g02718 Csa07g02159 . Cme01g02610 Blo07g00714 . . . . . . Bma15g00411 . Cmo01g00146 . Cma08g00678 . Car08g00568 . Cpe02g01652 . Bhi09g00029 Tan06g0407 . . . . . Cla09g00253 Cam09g0275 Cec09g0278 Cco09g0271 Clacu09g0279 . Cre09g0266 Lsi07g00464 . Chy01g02000 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g474 ECH 2 704 Phospholipase D Gene Family (Wang group) AT1G52570 60.8 1.2e-297 1019.2
Vvi4g479 ECH 11 753 Phospholipase D Gene Family (Wang group) AT1G52570 63.4 9.8e-295 1009.6
Vvi11g475 ECH 1 605 Phospholipase D Gene Family (Wang group) AT1G52570 52.9 3.8e-238 821.6
Vvi9g537 ECH 6 337 Phospholipase D Gene Family (Wang group) AT1G52570 67.0 8.4e-145 511.5
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT1G52570 85.2 4.0e-78 290.0
Vvi9g191 . 227 951 Phospholipase D Gene Family (Wang group) AT1G55180 63.0 7.6e-278 953.4
Vvi4g479 ECH 11 753 Phospholipase D Gene Family (Wang group) AT3G15730 65.1 2.9e-299 1024.6
Vvi11g474 ECH 2 704 Phospholipase D Gene Family (Wang group) AT3G15730 61.0 1.3e-294 1009.2
Vvi11g475 ECH 1 605 Phospholipase D Gene Family (Wang group) AT3G15730 53.5 1.8e-235 812.8
Vvi9g537 ECH 9 337 Phospholipase D Gene Family (Wang group) AT3G15730 69.0 2.1e-148 523.5
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT3G15730 85.8 2.8e-76 283.9
Vvi4g479 ECH 38 753 Phospholipase D Gene Family (Wang group) AT5G25370 62.4 3.1e-271 931.4
Vvi11g474 ECH 73 704 Phospholipase D Gene Family (Wang group) AT5G25370 53.1 9.8e-225 776.9
Vvi9g537 ECH 76 330 Phospholipase D Gene Family (Wang group) AT5G25370 52.9 1.3e-83 308.1
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 2.9e-51 200.7
Vvi2g419 ECH 28 840 Phospholipase D Gene Family (Wang group) AT2G42010 74.1 0.0e+00 1335.1
Vvi15g494 ECH 13 941 Phospholipase D Gene Family (Wang group) AT2G42010 64.0 0.0e+00 1288.5
Vvi12g1093 . 21 841 Phospholipase D Gene Family (Wang group) AT2G42010 54.8 4.3e-277 951.4
Vvi18g158 . 8 822 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 3.1e-251 865.5
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT2G42010 54.5 1.3e-42 172.6
Vvi2g419 ECH 71 840 Phospholipase D Gene Family (Wang group) AT4G00240 75.4 0.0e+00 1234.6
Vvi15g494 ECH 240 941 Phospholipase D Gene Family (Wang group) AT4G00240 72.4 0.0e+00 1158.7
Vvi12g1093 . 77 841 Phospholipase D Gene Family (Wang group) AT4G00240 57.0 6.5e-264 907.1
Vvi18g158 . 60 822 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 8.3e-243 837.0
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G00240 53.8 1.7e-41 168.3
Vvi2g419 ECH 19 626 Phospholipase D Gene Family (Wang group) AT4G11830 68.9 1.4e-259 892.5
Vvi15g494 ECH 200 725 Phospholipase D Gene Family (Wang group) AT4G11830 60.4 5.3e-211 731.1
Vvi12g1093 . 10 628 Phospholipase D Gene Family (Wang group) AT4G11830 51.3 1.2e-183 640.2
Vvi2g419 ECH 19 840 Phospholipase D Gene Family (Wang group) AT4G11840 68.1 0.0e+00 1187.6
Vvi15g494 ECH 181 941 Phospholipase D Gene Family (Wang group) AT4G11840 63.8 0.0e+00 1087.0
Vvi12g1093 . 25 841 Phospholipase D Gene Family (Wang group) AT4G11840 55.0 2.4e-264 908.7
Vvi18g158 . 11 822 Phospholipase D Gene Family (Wang group) AT4G11840 50.5 3.1e-243 838.6
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G11840 53.8 5.6e-43 173.3
Vvi2g419 ECH 18 840 Phospholipase D Gene Family (Wang group) AT4G11850 72.2 0.0e+00 1273.5
Vvi15g494 ECH 181 941 Phospholipase D Gene Family (Wang group) AT4G11850 63.7 0.0e+00 1086.6
Vvi12g1093 . 25 841 Phospholipase D Gene Family (Wang group) AT4G11850 55.2 6.8e-270 927.2
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G11850 52.4 2.0e-40 164.9
Vvi18g158 . 5 653 Phospholipase D Gene Family (Wang group) AT4G35790 60.5 6.5e-255 877.1
Vvi12g1093 . 17 672 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 3.2e-246 848.2
Vvi2g419 ECH 28 672 Phospholipase D Gene Family (Wang group) AT4G35790 51.8 2.0e-203 706.1
Vvi5g143 . 23 1122 Phospholipase D Gene Family (Wang group) AT3G05630 61.1 0.0e+00 1329.3
Vvi5g143 . 1 997 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1409.4
Vvi4g479 ECH 11 753 Phospholipase D Gene Family (Wang group) AT3G15730 65.1 2.9e-299 1024.6
Vvi11g474 ECH 2 704 Phospholipase D Gene Family (Wang group) AT3G15730 61.0 1.3e-294 1009.2
Vvi11g475 ECH 1 605 Phospholipase D Gene Family (Wang group) AT3G15730 53.5 1.8e-235 812.8
Vvi9g537 ECH 9 337 Phospholipase D Gene Family (Wang group) AT3G15730 69.0 2.1e-148 523.5
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT3G15730 85.8 2.8e-76 283.9
Vvi11g474 ECH 2 704 Phospholipase D Gene Family (Wang group) AT1G52570 60.8 1.2e-297 1019.2
Vvi4g479 ECH 11 753 Phospholipase D Gene Family (Wang group) AT1G52570 63.4 9.8e-295 1009.6
Vvi11g475 ECH 1 605 Phospholipase D Gene Family (Wang group) AT1G52570 52.9 3.8e-238 821.6
Vvi9g537 ECH 6 337 Phospholipase D Gene Family (Wang group) AT1G52570 67.0 8.4e-145 511.5
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT1G52570 85.2 4.0e-78 290.0
Vvi2g419 ECH 28 840 Phospholipase D Gene Family (Wang group) AT2G42010 74.1 0.0e+00 1335.1
Vvi15g494 ECH 13 941 Phospholipase D Gene Family (Wang group) AT2G42010 64.0 0.0e+00 1288.5
Vvi12g1093 . 21 841 Phospholipase D Gene Family (Wang group) AT2G42010 54.8 4.3e-277 951.4
Vvi18g158 . 8 822 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 3.1e-251 865.5
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT2G42010 54.5 1.3e-42 172.6
Vvi2g419 ECH 71 840 Phospholipase D Gene Family (Wang group) AT4G00240 75.4 0.0e+00 1234.6
Vvi15g494 ECH 240 941 Phospholipase D Gene Family (Wang group) AT4G00240 72.4 0.0e+00 1158.7
Vvi12g1093 . 77 841 Phospholipase D Gene Family (Wang group) AT4G00240 57.0 6.5e-264 907.1
Vvi18g158 . 60 822 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 8.3e-243 837.0
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G00240 53.8 1.7e-41 168.3
Vvi2g419 ECH 18 840 Phospholipase D Gene Family (Wang group) AT4G11850 72.2 0.0e+00 1273.5
Vvi15g494 ECH 181 941 Phospholipase D Gene Family (Wang group) AT4G11850 63.7 0.0e+00 1086.6
Vvi12g1093 . 25 841 Phospholipase D Gene Family (Wang group) AT4G11850 55.2 6.8e-270 927.2
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G11850 52.4 2.0e-40 164.9
Vvi2g419 ECH 19 626 Phospholipase D Gene Family (Wang group) AT4G11830 68.9 1.4e-259 892.5
Vvi15g494 ECH 200 725 Phospholipase D Gene Family (Wang group) AT4G11830 60.4 5.3e-211 731.1
Vvi12g1093 . 10 628 Phospholipase D Gene Family (Wang group) AT4G11830 51.3 1.2e-183 640.2
Vvi2g419 ECH 19 840 Phospholipase D Gene Family (Wang group) AT4G11840 68.1 0.0e+00 1187.6
Vvi15g494 ECH 181 941 Phospholipase D Gene Family (Wang group) AT4G11840 63.8 0.0e+00 1087.0
Vvi12g1093 . 25 841 Phospholipase D Gene Family (Wang group) AT4G11840 55.0 2.4e-264 908.7
Vvi18g158 . 11 822 Phospholipase D Gene Family (Wang group) AT4G11840 50.5 3.1e-243 838.6
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G11840 53.8 5.6e-43 173.3
Vvi18g158 . 5 653 Phospholipase D Gene Family (Wang group) AT4G35790 60.5 6.5e-255 877.1
Vvi12g1093 . 17 672 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 3.2e-246 848.2
Vvi2g419 ECH 28 672 Phospholipase D Gene Family (Wang group) AT4G35790 51.8 2.0e-203 706.1
Vvi9g191 . 227 951 Phospholipase D Gene Family (Wang group) AT1G55180 63.0 7.6e-278 953.4
Vvi4g479 ECH 38 753 Phospholipase D Gene Family (Wang group) AT5G25370 62.4 3.1e-271 931.4
Vvi11g474 ECH 73 704 Phospholipase D Gene Family (Wang group) AT5G25370 53.1 9.8e-225 776.9
Vvi9g537 ECH 76 330 Phospholipase D Gene Family (Wang group) AT5G25370 52.9 1.3e-83 308.1
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 2.9e-51 200.7
Vvi5g143 . 1 997 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1409.4
Vvi5g143 . 23 1122 Phospholipase D Gene Family (Wang group) AT3G05630 61.1 0.0e+00 1329.3
Vvi4g479 ECH 11 753 Phospholipase D Gene Family (Wang group) AT3G15730 65.1 2.9e-299 1024.6
Vvi11g474 ECH 2 704 Phospholipase D Gene Family (Wang group) AT3G15730 61.0 1.3e-294 1009.2
Vvi11g475 ECH 1 605 Phospholipase D Gene Family (Wang group) AT3G15730 53.5 1.8e-235 812.8
Vvi9g537 ECH 9 337 Phospholipase D Gene Family (Wang group) AT3G15730 69.0 2.1e-148 523.5
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT3G15730 85.8 2.8e-76 283.9
Vvi11g474 ECH 2 704 Phospholipase D Gene Family (Wang group) AT1G52570 60.8 1.2e-297 1019.2
Vvi4g479 ECH 11 753 Phospholipase D Gene Family (Wang group) AT1G52570 63.4 9.8e-295 1009.6
Vvi11g475 ECH 1 605 Phospholipase D Gene Family (Wang group) AT1G52570 52.9 3.8e-238 821.6
Vvi9g537 ECH 6 337 Phospholipase D Gene Family (Wang group) AT1G52570 67.0 8.4e-145 511.5
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT1G52570 85.2 4.0e-78 290.0
Vvi4g479 ECH 38 753 Phospholipase D Gene Family (Wang group) AT5G25370 62.4 3.1e-271 931.4
Vvi11g474 ECH 73 704 Phospholipase D Gene Family (Wang group) AT5G25370 53.1 9.8e-225 776.9
Vvi9g537 ECH 76 330 Phospholipase D Gene Family (Wang group) AT5G25370 52.9 1.3e-83 308.1
Vvi9g538 ECH 1 155 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 2.9e-51 200.7
Vvi9g191 . 227 951 Phospholipase D Gene Family (Wang group) AT1G55180 63.0 7.6e-278 953.4
Vvi2g419 ECH 28 840 Phospholipase D Gene Family (Wang group) AT2G42010 74.1 0.0e+00 1335.1
Vvi15g494 ECH 13 941 Phospholipase D Gene Family (Wang group) AT2G42010 64.0 0.0e+00 1288.5
Vvi12g1093 . 21 841 Phospholipase D Gene Family (Wang group) AT2G42010 54.8 4.3e-277 951.4
Vvi18g158 . 8 822 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 3.1e-251 865.5
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT2G42010 54.5 1.3e-42 172.6
Vvi2g419 ECH 71 840 Phospholipase D Gene Family (Wang group) AT4G00240 75.4 0.0e+00 1234.6
Vvi15g494 ECH 240 941 Phospholipase D Gene Family (Wang group) AT4G00240 72.4 0.0e+00 1158.7
Vvi12g1093 . 77 841 Phospholipase D Gene Family (Wang group) AT4G00240 57.0 6.5e-264 907.1
Vvi18g158 . 60 822 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 8.3e-243 837.0
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G00240 53.8 1.7e-41 168.3
Vvi2g419 ECH 18 840 Phospholipase D Gene Family (Wang group) AT4G11850 72.2 0.0e+00 1273.5
Vvi15g494 ECH 181 941 Phospholipase D Gene Family (Wang group) AT4G11850 63.7 0.0e+00 1086.6
Vvi12g1093 . 25 841 Phospholipase D Gene Family (Wang group) AT4G11850 55.2 6.8e-270 927.2
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G11850 52.4 2.0e-40 164.9
Vvi2g419 ECH 19 626 Phospholipase D Gene Family (Wang group) AT4G11830 68.9 1.4e-259 892.5
Vvi15g494 ECH 200 725 Phospholipase D Gene Family (Wang group) AT4G11830 60.4 5.3e-211 731.1
Vvi12g1093 . 10 628 Phospholipase D Gene Family (Wang group) AT4G11830 51.3 1.2e-183 640.2
Vvi2g419 ECH 19 840 Phospholipase D Gene Family (Wang group) AT4G11840 68.1 0.0e+00 1187.6
Vvi15g494 ECH 181 941 Phospholipase D Gene Family (Wang group) AT4G11840 63.8 0.0e+00 1087.0
Vvi12g1093 . 25 841 Phospholipase D Gene Family (Wang group) AT4G11840 55.0 2.4e-264 908.7
Vvi18g158 . 11 822 Phospholipase D Gene Family (Wang group) AT4G11840 50.5 3.1e-243 838.6
Vvi9g538 ECH 1 143 Phospholipase D Gene Family (Wang group) AT4G11840 53.8 5.6e-43 173.3
Vvi18g158 . 5 653 Phospholipase D Gene Family (Wang group) AT4G35790 60.5 6.5e-255 877.1
Vvi12g1093 . 17 672 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 3.2e-246 848.2
Vvi2g419 ECH 28 672 Phospholipase D Gene Family (Wang group) AT4G35790 51.8 2.0e-203 706.1
Vvi5g143 . 1 997 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1409.4
Vvi5g143 . 23 1122 Phospholipase D Gene Family (Wang group) AT3G05630 61.1 0.0e+00 1329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000683 2 9 4 3 3 3 2 2 3 3 3 3 3 2 3 3 3 5 3 2 3 3 3 3 2 3 3 4 6 4 98