Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g538 ATGATTTATGTTCATGCCAAGATGATGATTGTTGATGACGAATACATCATAATCGGATCCGCCAACATCAACCAGAGATCCATGGATGGTGCCAGAGACTCCGAGATAGCCATGGGAGGATACCAACCATATCACTTGGCAAGCAGGCAGCCAGCACGAGGTCAGATCCATGGTTTCCGAATGTCATTGTGGTACGAGCACCTTGGCATGCTCGATGAGTCCTTCCTCCAGCCAGAAAGCAAGGAGTGCATCCAAAAGGTGAACCAGATCGCTGAAAAATACTGGGATCTGTACGCAAGCGAGACACTTGAGCATGACCTCCCTGGTCATCTCCTCCGCTACCCTATAGCGGTCTCCTGTGGGGGAGACATAACAGAGCTTCCAGGAGCTGAGTTTTTCCCCGACACCAAGGCCCGCGTTCTTGGCACCAAGTCCGAATATTTGCCTCCAATCCTCACAACTTAG 465 50.75 MIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLASRQPARGQIHGFRMSLWYEHLGMLDESFLQPESKECIQKVNQIAEKYWDLYASETLEHDLPGHLLRYPIAVSCGGDITELPGAEFFPDTKARVLGTKSEYLPPILTT* 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6683709 6685577 + Vvi9g538 Vvi9g538 792249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g538 154 SUPERFAMILY Phospholipase D/nuclease 2 84 - -
Vvi9g538 154 SMART pld_4 1 27 IPR001736 GO:0003824
Vvi9g538 154 PANTHER PHOSPHOLIPASE D 1 154 IPR015679 -
Vvi9g538 154 PANTHER PHOSPHOLIPASE D ALPHA 1 1 154 - -
Vvi9g538 154 Pfam Phospholipase D C terminal 72 144 IPR024632 -
Vvi9g538 154 Gene3D Endonuclease Chain A 1 49 - -
Vvi9g538 154 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1 27 IPR001736 GO:0003824
Vvi9g538 154 Pfam Phospholipase D Active site motif 1 27 IPR001736 GO:0003824
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g479 Vvi9g538 ECH
Vvi9g538 Vvi11g475 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g538 K01115 - vvi:100232987 320.087