Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g66 ATGACCCTTGCTTCATCTTCTGTTTTCTTTTTCACTGTCGTCCTTCTTTTTCCGTTCAGTTTCTCGATGTCGGATTCTGAAGCTTTGCTTAAGCTCAAGCAATCTTTTACCAATACTAATGCTCTCGATTCTTGGGAGCCTGGTTCTGGGCCTTGCTCTGGAGATAAGGAATGGGGTGGACTGGTTTGTTTCAATGGCATTGTCACAGGTCTTCATTTGGTAGGAATGGGATTATCCGGGAAAATCGACGTCGAAGCTTTGATTGCGATCACGGGTCTTCGGACCATCAGCATTGTAAACAATTCTTTTTCGGGTTCCATCCCGGAATTCAACCGATTGGGGGCTTTGAAGGCCATTTTCATATCTGGGAATCAGTTTTCCGGCGAGATTCCGCCAGATTACTTTGTGAGAATGGCTTCTTTGAAAAAACTATGGCTTTCCGATAATAAATTCACCGGCGCAATTCCTTTGTCAATTCAGCTTCTTTCTCATCTTATTGAGCTGCACCTTGAAAACAACCAATTCACCGGAACTATCCCGGATTTTAATCTGCCAACGTTGAAGTCGCTTAATCTTTCGAATAATAAATTAAAGGGAGCCATCCCCGATAGTTTATCGAAATTTGGTGGGAGCGCATTTGCAGGCAATGCGGGACTGTGTGGGGAAGAATTGGGAAATGGGTGCAATGATCATGGGATTGATCTCGGCACAGACAGGTCCCGCAAGGCCATTGCAGTGATCATATCAGTGGCTGTCGTGATTATATCCCTTCTAATCATCGTGGTTTTTCTGATGAGGAGAAGAAAAGAGGAAGAATTCGACGTGCTTGAGAATGTTGACGAGTCAGTTGAGGTGCGAATATCGGGGTCTAGCAGAAAGGAGGGATCAAGCACCAGCAGAAGGGCCATAGGCTCGAGCCGGAGGGGCTCCAACCGTTCGAGCCAGGTCAAGAGCAGCATGAAGGAGGACATGGTGGTGGTGAATGAAGAAAAAGGTATTTTCGGGATGTCGGACTTGATGAAAGCTGCTGCTGAGGTGCTTGGAACTGGCAGTTTGGGGTCGGCCTACAAGGCGGTGATGGCCACCGGCATTGCGGTGGTGGTGAAGAGGATGAAAGAAATGAATAGAGTAAGCAAAGAAGGATTCGATCTGGAGCTCAGGCGACTGGGCAGCCTGCAACACCCCAATGTTCTAAACCCTTTGGGTTACCATTTTCGAAAAGAGGAGAAGCTCATCATCTACGAGTACATTCCCAAAGGCAGTTTGCTATTTGTACTCCATGGTGATCGAGGACCCTCCCATGCGGAGCTCAATTGGCCAGCGCGTTTAAAGATCGTTCAAGGGATCGCTCGAGGATTGGGCTATCTCCACACCGAGCTAGCCTCATTGGACTTGCCCCATGGCAATCTCAAATCAAGCAATATCCTTCTCACCTTCGACCACGATCCATTACTCTCAGACTATGGATATAGCCCATTGATCAGCGTCAGCTTTGTTTCACAAGCCTTGTTCGCCTACAGGGCCCCCGAGGCCGTCCGGGACAATCAGATATCGCCCAAGTGCGACGTCTACTGCCTGGGAATCGTCATTCTTGAGATCCTCATTGGAAAATTTCCCACGCAGTATCTAAACAACAGCAAAGGCGGCACCGACGTGGTGGAATGGGCGGTGTCCGCCATTGCAGACGGGAGAGAAGCTGAGGTATTCGATCCCGAGATCGCAAGCTCCATAAACTCCATGGAAGAGATGGTGAAGCTCCTCCACATCGGGGTCGCTTGCGCCGAGAGCAACCCCGAGCAGCGACCGGACATAAAGGAGGCCATTAGAAGGATAGAGGAAATACATGTAGAGGGAGGCGGCAGCGGAGGAGGAGCTAGCCATGATAGAACCATTCAAGTTCTGCCGTCCCTCCGGGACGGATACGGAGAAGTGCCGGTGGCAGGACCGCAATCGAGCCCTCGGGAGGCGTATGGCGAGATCTCTCTGAATGGATCCGACAGCCTCGAAGAGAACCCCGGCGCCGGGCACCGCAACGACAACTTCTCATTTTCCATTTCCTAA 2061 50.02 MTLASSSVFFFTVVLLFPFSFSMSDSEALLKLKQSFTNTNALDSWEPGSGPCSGDKEWGGLVCFNGIVTGLHLVGMGLSGKIDVEALIAITGLRTISIVNNSFSGSIPEFNRLGALKAIFISGNQFSGEIPPDYFVRMASLKKLWLSDNKFTGAIPLSIQLLSHLIELHLENNQFTGTIPDFNLPTLKSLNLSNNKLKGAIPDSLSKFGGSAFAGNAGLCGEELGNGCNDHGIDLGTDRSRKAIAVIISVAVVIISLLIIVVFLMRRRKEEEFDVLENVDESVEVRISGSSRKEGSSTSRRAIGSSRRGSNRSSQVKSSMKEDMVVVNEEKGIFGMSDLMKAAAEVLGTGSLGSAYKAVMATGIAVVVKRMKEMNRVSKEGFDLELRRLGSLQHPNVLNPLGYHFRKEEKLIIYEYIPKGSLLFVLHGDRGPSHAELNWPARLKIVQGIARGLGYLHTELASLDLPHGNLKSSNILLTFDHDPLLSDYGYSPLISVSFVSQALFAYRAPEAVRDNQISPKCDVYCLGIVILEILIGKFPTQYLNNSKGGTDVVEWAVSAIADGREAEVFDPEIASSINSMEEMVKLLHIGVACAESNPEQRPDIKEAIRRIEEIHVEGGGSGGGASHDRTIQVLPSLRDGYGEVPVAGPQSSPREAYGEISLNGSDSLEENPGAGHRNDNFSFSIS* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 653030 655698 + Vvi9g66 Vvi9g66 791777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g66 686 Gene3D Ribonuclease Inhibitor 24 135 IPR032675 -
Vvi9g66 686 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vvi9g66 686 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 620 - -
Vvi9g66 686 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Vvi9g66 686 MobiDBLite consensus disorder prediction 646 686 - -
Vvi9g66 686 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g66 686 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515
Vvi9g66 686 MobiDBLite consensus disorder prediction 289 321 - -
Vvi9g66 686 Gene3D Ribonuclease Inhibitor 136 230 IPR032675 -
Vvi9g66 686 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 620 - -
Vvi9g66 686 MobiDBLite consensus disorder prediction 287 322 - -
Vvi9g66 686 Pfam Protein kinase domain 345 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g66 686 SUPERFAMILY Protein kinase-like (PK-like) 345 611 IPR011009 -
Vvi9g66 686 Gene3D Transferase(Phosphotransferase) domain 1 417 619 - -
Vvi9g66 686 SUPERFAMILY L domain-like 52 207 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g66 Vvi11g49 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76870 PF00069 Pkinase 6.90E-30 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g66 - - vri:117922594 1244.18