Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g690 ATGTGTCTCTCTTCTCAGCACAACAACAGCGGGAAAACCATGGACCGAGAAGCTTTGCGAGCTGTTACGTTTTTTCCTAAACCTGAATCCTTCGAAGTTCATGAAACCTTACGCTACTTGAGCGAAACCGCACCGTTTTACGGATCCCTTCTTGGAGCCCACTTCTCACTTTCTTCTGTTTCTGTCCCGGAGCTCGTCAACCTGCCCAGCAATGGTGCTGTTTTGGCCGATTTATCGGGGAATTTGGGGGATGGTACCCAGAAGGAAGCCGAAATTCCTCCGGTTCTTGACGGAATAGCTGCGGTTGTTGGCCAACACGTTCTCTTTGGAGGGAAAAAGAGTGGGAGCAGCTTGGTGGATAAGAAAAATATCGGTGACGTTTCCGTGCAGAAGAGCTATAGAGGAGTGAGAAAGCGGCCGTGGGGGAGGTGGTCGGCGGAGATTCGCGACAGAATCGGGCGCTGCAGGCACTGGCTGGGCACGTTCGACACGGCGGAGGAGGCAGCGCGTGCATACGACGCGGCGGCGAGGCGGCTCAGAGGGTCGAAAGCTCGGACCAACTTCGAGATCCCCTCGGTGTTGCCTCTCTCATCCCCATCTTCTTCGTCGTCATCATCTGAAATGAAGAGGAATATGAGTAGTAAGCCTAAGGCGCAGAATAGAAGAAAGTGCTCAGTAGTCACTTCTGTTGCTCATCTCTTCAGTTCTAGTTCTATCCCTTCCACCACTGAAGTTAAGGGAAAAGTAAATGTGGAGCTAGATTTGAAGCTGGGTGTCAATTTCAGTAACAGAAATGCTGCATCAGTGCCTCTTTCACCTTCTACATGA 828 51.33 MCLSSQHNNSGKTMDREALRAVTFFPKPESFEVHETLRYLSETAPFYGSLLGAHFSLSSVSVPELVNLPSNGAVLADLSGNLGDGTQKEAEIPPVLDGIAAVVGQHVLFGGKKSGSSLVDKKNIGDVSVQKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLSSPSSSSSSSEMKRNMSSKPKAQNRRKCSVVTSVAHLFSSSSIPSTTEVKGKVNVELDLKLGVNFSNRNAASVPLSPST* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10245401 10246292 - Vvi9g690 Vvi9g690 792401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g690 275 SUPERFAMILY DNA-binding domain 132 189 IPR016177 GO:0003677
Vvi9g690 275 MobiDBLite consensus disorder prediction 194 223 - -
Vvi9g690 275 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 76 256 - -
Vvi9g690 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 76 256 - -
Vvi9g690 275 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Vvi9g690 275 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Vvi9g690 275 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Vvi9g690 275 CDD AP2 131 190 IPR001471 GO:0003700|GO:0006355
Vvi9g690 275 Gene3D AP2/ERF domain 131 190 IPR036955 GO:0003700|GO:0006355
Vvi9g690 275 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Vvi9g690 275 Pfam AP2 domain 132 181 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15244 PF00847 AP2 2.20E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g690 - - vvi:100250926 463.766